Two-Photon Spectroscopy as a New Sensitive Method for Determining the DNA Binding Mode of Fluorescent Nuclear Dyes

Phi H. Doan, Demar R G Pitter, Andrea Kocher, James N Wilson, Theodore Goodson

Research output: Contribution to journalArticle

24 Citations (Scopus)

Abstract

A new optical strategy to determine the binding modes (intercalation vs groove binding) of small fluorescent organic molecules with calf thymus DNA was developed using two-photon absorption (TPA) spectroscopy. Two-photon excited emission was utilized to investigate a series of fluorescent nuclear dyes. The results show that TPA cross-sections are able to differentiate the fine details between the DNA binding modes. Groove binding molecules exhibit an enhanced TPA cross-section due to the DNA electric field induced enhancement of the transition dipole moment, while intercalative binding molecules exhibit a decrease in the TPA cross-section. Remarkably, the TPA cross-section of 4,6-bis(4-(4-methylpiperazin-1-yl)phenyl) pyrimidine is significantly enhanced (13.6-fold) upon binding with DNA. The sensitivity of our TPA methodology is compared to circular dichroism spectroscopy. TPA demonstrates superior sensitivity by more than an order of magnitude at low DNA concentrations. This methodology can be utilized to probe DNA interactions with other external molecules such as proteins, enzymes, and drugs.

Original languageEnglish (US)
Pages (from-to)9198-9201
Number of pages4
JournalJournal of the American Chemical Society
Volume137
Issue number29
DOIs
StatePublished - Jul 29 2015

Fingerprint

Fluorescent Dyes
Photons
Spectrum Analysis
DNA
Coloring Agents
Dyes
Spectroscopy
Molecules
Circular dichroism spectroscopy
Thymus
Dipole moment
DNA Probes
Intercalation
Circular Dichroism
Absorption spectroscopy
Enzymes
Electric fields
Proteins
Pharmaceutical Preparations

ASJC Scopus subject areas

  • Chemistry(all)
  • Catalysis
  • Biochemistry
  • Colloid and Surface Chemistry

Cite this

Two-Photon Spectroscopy as a New Sensitive Method for Determining the DNA Binding Mode of Fluorescent Nuclear Dyes. / Doan, Phi H.; Pitter, Demar R G; Kocher, Andrea; Wilson, James N; Goodson, Theodore.

In: Journal of the American Chemical Society, Vol. 137, No. 29, 29.07.2015, p. 9198-9201.

Research output: Contribution to journalArticle

Doan, Phi H. ; Pitter, Demar R G ; Kocher, Andrea ; Wilson, James N ; Goodson, Theodore. / Two-Photon Spectroscopy as a New Sensitive Method for Determining the DNA Binding Mode of Fluorescent Nuclear Dyes. In: Journal of the American Chemical Society. 2015 ; Vol. 137, No. 29. pp. 9198-9201.
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