SNPs in the neural cell adhesion molecule 1 gene (NCAM1) may be associated with human neural tube defects

Kristen L. Deak, Abee L. Boyles, Heather C. Etchevers, Elizabeth C. Melvin, Deborah G. Siegel, Felicia L. Graham, Susan H. Slifer, David S. Enterline, Timothy M. George, Michel Vekemans, David McClay, Alexander G. Bassuk, John A. Kessler, Elwood Linney, John R. Gilbert, Marcy C. Speer, Joanna Aben, Arthur Aylsworth, Cynthia Powell, Joanne MackeyGordon Worley, Timothy Brei, Connie Buran, Joann Bodurtha, Kathleen Sawin, Mark S. Dias, Philip Mack, Elli Meeropol, Nicole Lasarsky, David McLone, Joy Ito, Jerry Oakes, Marion Walker, Bermans Iskandar

Research output: Contribution to journalArticle

20 Scopus citations

Abstract

Neural tube defects (NTDs) are common birth defects, occurring in approximately 1/1,000 births; both genetic and environmental factors are implicated. To date, no major genetic risk factors have been identified. Throughout development, cell adhesion molecules are strongly implicated in cell-cell interactions, and may play a role in the formation and closure of the neural tube. To evaluate the role of neural cell adhesion molecule 1 (NCAM1) in risk of human NTDs, we screened for novel single-nucleotide polymorphisms (SNPs) within the gene. Eleven SNPs across NCAM1 were genotyped using TaqMan. We utilized a family-based approach to evaluate evidence for association and/or linkage disequilibrium. We evaluated American Caucasian simplex lumbosacral myelomeningocele families (n=132 families) using the family based association test (FBAT) and the pedigree disequilibrium test (PDT). Association analysis revealed a significant association between risk for NTDs and intronic SNP rs2298526 using both the FBAT test (P=0.0018) and the PDT (P=0.0025). sing the HBAT version of the FBAT to look for haplotype association, all pairwise comparisons with SNP rs2298526 were also significant. A replication study set, consisting of 72 additional families showed no significant association; however, the overall trend for overtransmission of the less common allele of SNP rs2298526 remained significant in the combined sample set. In addition, we analyzed the expression pattern of the NCAM1 protein in human embryos, and while NCAM1 is not expressed within the neural tube at the time of closure, it is expressed in the surrounding and later in differentiated neurons of the CNS. These results suggest variations in NCAM1 may influence risk for human NTDs.

Original languageEnglish (US)
Pages (from-to)133-142
Number of pages10
JournalHuman Genetics
Volume117
Issue number2-3
DOIs
StatePublished - Jul 1 2005

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

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    Deak, K. L., Boyles, A. L., Etchevers, H. C., Melvin, E. C., Siegel, D. G., Graham, F. L., Slifer, S. H., Enterline, D. S., George, T. M., Vekemans, M., McClay, D., Bassuk, A. G., Kessler, J. A., Linney, E., Gilbert, J. R., Speer, M. C., Aben, J., Aylsworth, A., Powell, C., ... Iskandar, B. (2005). SNPs in the neural cell adhesion molecule 1 gene (NCAM1) may be associated with human neural tube defects. Human Genetics, 117(2-3), 133-142. https://doi.org/10.1007/s00439-005-1299-7