Robust single-cell DNA methylome profiling with snmC-seq2

Chongyuan Luo, Angeline Rivkin, Jingtian Zhou, Justin P. Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, Joseph R. Nery, António Pinto-Duarte, Brian Bui, Conor Fitzpatrick, Carolyn O’Connor, Seth Ruga, Marc E. Van Eden, David A. Davis, Deborah C Mash, M. Margarita Behrens, Joseph R. Ecker

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

Single-cell DNA methylome profiling has enabled the study of epigenomic heterogeneity in complex tissues and during cellular reprogramming. However, broader applications of the method have been impeded by the modest quality of sequencing libraries. Here we report snmC-seq2, which provides improved read mapping, reduced artifactual reads, enhanced throughput, as well as increased library complexity and coverage uniformity compared to snmC-seq. snmC-seq2 is an efficient strategy suited for large-scale single-cell epigenomic studies.

Original languageEnglish (US)
Article number3824
JournalNature Communications
Volume9
Issue number1
DOIs
StatePublished - Dec 1 2018

Fingerprint

DNA Fingerprinting
Epigenomics
deoxyribonucleic acid
Throughput
Tissue
sequencing
DNA
cells
Libraries
Cellular Reprogramming

ASJC Scopus subject areas

  • Chemistry(all)
  • Biochemistry, Genetics and Molecular Biology(all)
  • Physics and Astronomy(all)

Cite this

Luo, C., Rivkin, A., Zhou, J., Sandoval, J. P., Kurihara, L., Lucero, J., ... Ecker, J. R. (2018). Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications, 9(1), [3824]. https://doi.org/10.1038/s41467-018-06355-2

Robust single-cell DNA methylome profiling with snmC-seq2. / Luo, Chongyuan; Rivkin, Angeline; Zhou, Jingtian; Sandoval, Justin P.; Kurihara, Laurie; Lucero, Jacinta; Castanon, Rosa; Nery, Joseph R.; Pinto-Duarte, António; Bui, Brian; Fitzpatrick, Conor; O’Connor, Carolyn; Ruga, Seth; Van Eden, Marc E.; Davis, David A.; Mash, Deborah C; Behrens, M. Margarita; Ecker, Joseph R.

In: Nature Communications, Vol. 9, No. 1, 3824, 01.12.2018.

Research output: Contribution to journalArticle

Luo, C, Rivkin, A, Zhou, J, Sandoval, JP, Kurihara, L, Lucero, J, Castanon, R, Nery, JR, Pinto-Duarte, A, Bui, B, Fitzpatrick, C, O’Connor, C, Ruga, S, Van Eden, ME, Davis, DA, Mash, DC, Behrens, MM & Ecker, JR 2018, 'Robust single-cell DNA methylome profiling with snmC-seq2', Nature Communications, vol. 9, no. 1, 3824. https://doi.org/10.1038/s41467-018-06355-2
Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J et al. Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications. 2018 Dec 1;9(1). 3824. https://doi.org/10.1038/s41467-018-06355-2
Luo, Chongyuan ; Rivkin, Angeline ; Zhou, Jingtian ; Sandoval, Justin P. ; Kurihara, Laurie ; Lucero, Jacinta ; Castanon, Rosa ; Nery, Joseph R. ; Pinto-Duarte, António ; Bui, Brian ; Fitzpatrick, Conor ; O’Connor, Carolyn ; Ruga, Seth ; Van Eden, Marc E. ; Davis, David A. ; Mash, Deborah C ; Behrens, M. Margarita ; Ecker, Joseph R. / Robust single-cell DNA methylome profiling with snmC-seq2. In: Nature Communications. 2018 ; Vol. 9, No. 1.
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