RNAdb - A comprehensive mammalian noncoding RNA database

Ken C. Pang, Stuart Stephen, Pär G. Engström, Khairina Tajul-Arifin, Weisan Chen, Claes Wahlestedt, Boris Lenhard, Yoshihide Hayashizaki, John S. Mattick

Research output: Contribution to journalArticle

122 Scopus citations

Abstract

In recent years, there have been increasing numbers of transcripts identified that do not encode proteins, many of which are developmentally regulated and appear to have regulatory functions. Here, we describe the construction of a comprehensive mammalian noncoding RNA database (RNAdb) which contains over 800 unique experimentally studied non-coding RNAs (ncRNAs), including many associated with diseases and/or developmental processes. The database is available at http://research.imb.uq. edu.au/RNAdb and is searchable by many criteria. It includes microRNAs and snoRNAs, but not infrastructural RNAs, such as rRNAs and tRNAs, which are catalogued elsewhere. The database also includes over 1100 putative antisense ncRNAs and almost 20 000 putative ncRNAs identified in high-quality murine and human cDNA libraries, with more to be added in the near future. Many of these RNAs are large, and many are spliced, some alternatively. The database will be useful as a foundation for the emerging field of RNomics and the characterization of the roles of ncRNAs in mammalian gene expression and regulation.

Original languageEnglish (US)
Pages (from-to)D125-D130
JournalNucleic acids research
Volume33
Issue numberDATABASE ISS.
DOIs
StatePublished - Jan 1 2005

ASJC Scopus subject areas

  • Genetics

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    Pang, K. C., Stephen, S., Engström, P. G., Tajul-Arifin, K., Chen, W., Wahlestedt, C., Lenhard, B., Hayashizaki, Y., & Mattick, J. S. (2005). RNAdb - A comprehensive mammalian noncoding RNA database. Nucleic acids research, 33(DATABASE ISS.), D125-D130. https://doi.org/10.1093/nar/gki089