Proteomic analyses of zebra finch optic tectum and comparative histochemistry

Stephanie Sloley; Shannon Smith; Sonia Gandhi; Jennifer A. Caldwell Busby; Sarah London; Harald Luksch; David F. Clayton; Sanjoy K. Bhattacharya

doi:10.1021/pr070126w

Proteomic analyses of zebra finch optic tectum and comparative histochemistry

Stephanie Sloley, Shannon Smith, Sonia Gandhi, Jennifer A. Caldwell Busby, Sarah London, Harald Luksch, David F. Clayton, Sanjoy K. Bhattacharya

Ophthalmology

Research output: Contribution to journal › Article

10 Scopus citations

Abstract

Proteomic analyses of zebra finch (Taeniopygia guttata) optic tectum resulted in identification of 176 proteins. In the Swissprot database, only 52 proteins were identified as bird homologs and only 71 proteins were identified in songbird transcriptome databases, reflecting a lack of completeness in the T. guttata genomic sequence. Analysis in Kyoto encyclopedia of genes and genome (KEGG) pathway database found that identified proteins most frequently belong to glucose, pyruvate, glyoxylate, dicarboxylate, alanine, and aspartate metabolism pathways. A number of identified proteins have been previously reported to exist in the avian optic tectum. The immunohistochemical localization of selected proteins showed their distribution in similar laminae of the owl (Tyto alba) and chicken (Gallus gallus) tectum. Immunohistochemical analysis of identified proteins can provide clues about cell types and circuit layout of the avian optic tectum in general. As the optic tectum of nonmammals is homologous to the superior colliculus of mammals, the analysis of the tectal and collicular proteome may provide clues about conserved cell and circuit layout, circuit function, and evolution.

Original language	English (US)
Pages (from-to)	2341-2350
Number of pages	10
Journal	Journal of Proteome Research
Volume	6
Issue number	6
DOIs	https://doi.org/10.1021/pr070126w
State	Published - Jun 1 2007

Keywords

Circuit function
Optic tectum
Proteome
Taeniopygia guttata
Zebra finch

ASJC Scopus subject areas

Genetics
Biotechnology
Biochemistry

Access to Document

10.1021/pr070126w

Fingerprint Dive into the research topics of 'Proteomic analyses of zebra finch optic tectum and comparative histochemistry'. Together they form a unique fingerprint.

Cite this

Sloley, S., Smith, S., Gandhi, S., Caldwell Busby, J. A., London, S., Luksch, H., Clayton, D. F., & Bhattacharya, S. K. (2007). Proteomic analyses of zebra finch optic tectum and comparative histochemistry. Journal of Proteome Research, 6(6), 2341-2350. https://doi.org/10.1021/pr070126w

@article{82fb38fc635c49f5a5546e3c17d27b9c,

title = "Proteomic analyses of zebra finch optic tectum and comparative histochemistry",

abstract = "Proteomic analyses of zebra finch (Taeniopygia guttata) optic tectum resulted in identification of 176 proteins. In the Swissprot database, only 52 proteins were identified as bird homologs and only 71 proteins were identified in songbird transcriptome databases, reflecting a lack of completeness in the T. guttata genomic sequence. Analysis in Kyoto encyclopedia of genes and genome (KEGG) pathway database found that identified proteins most frequently belong to glucose, pyruvate, glyoxylate, dicarboxylate, alanine, and aspartate metabolism pathways. A number of identified proteins have been previously reported to exist in the avian optic tectum. The immunohistochemical localization of selected proteins showed their distribution in similar laminae of the owl (Tyto alba) and chicken (Gallus gallus) tectum. Immunohistochemical analysis of identified proteins can provide clues about cell types and circuit layout of the avian optic tectum in general. As the optic tectum of nonmammals is homologous to the superior colliculus of mammals, the analysis of the tectal and collicular proteome may provide clues about conserved cell and circuit layout, circuit function, and evolution.",

keywords = "Circuit function, Optic tectum, Proteome, Taeniopygia guttata, Zebra finch",

author = "Stephanie Sloley and Shannon Smith and Sonia Gandhi and {Caldwell Busby}, {Jennifer A.} and Sarah London and Harald Luksch and Clayton, {David F.} and Bhattacharya, {Sanjoy K.}",

year = "2007",

month = jun,

day = "1",

doi = "10.1021/pr070126w",

language = "English (US)",

volume = "6",

pages = "2341--2350",

journal = "Journal of Proteome Research",

issn = "1535-3893",

publisher = "American Chemical Society",

number = "6",

}

TY - JOUR

T1 - Proteomic analyses of zebra finch optic tectum and comparative histochemistry

AU - Sloley, Stephanie

AU - Smith, Shannon

AU - Gandhi, Sonia

AU - Caldwell Busby, Jennifer A.

AU - London, Sarah

AU - Luksch, Harald

AU - Clayton, David F.

AU - Bhattacharya, Sanjoy K.

PY - 2007/6/1

Y1 - 2007/6/1

N2 - Proteomic analyses of zebra finch (Taeniopygia guttata) optic tectum resulted in identification of 176 proteins. In the Swissprot database, only 52 proteins were identified as bird homologs and only 71 proteins were identified in songbird transcriptome databases, reflecting a lack of completeness in the T. guttata genomic sequence. Analysis in Kyoto encyclopedia of genes and genome (KEGG) pathway database found that identified proteins most frequently belong to glucose, pyruvate, glyoxylate, dicarboxylate, alanine, and aspartate metabolism pathways. A number of identified proteins have been previously reported to exist in the avian optic tectum. The immunohistochemical localization of selected proteins showed their distribution in similar laminae of the owl (Tyto alba) and chicken (Gallus gallus) tectum. Immunohistochemical analysis of identified proteins can provide clues about cell types and circuit layout of the avian optic tectum in general. As the optic tectum of nonmammals is homologous to the superior colliculus of mammals, the analysis of the tectal and collicular proteome may provide clues about conserved cell and circuit layout, circuit function, and evolution.

AB - Proteomic analyses of zebra finch (Taeniopygia guttata) optic tectum resulted in identification of 176 proteins. In the Swissprot database, only 52 proteins were identified as bird homologs and only 71 proteins were identified in songbird transcriptome databases, reflecting a lack of completeness in the T. guttata genomic sequence. Analysis in Kyoto encyclopedia of genes and genome (KEGG) pathway database found that identified proteins most frequently belong to glucose, pyruvate, glyoxylate, dicarboxylate, alanine, and aspartate metabolism pathways. A number of identified proteins have been previously reported to exist in the avian optic tectum. The immunohistochemical localization of selected proteins showed their distribution in similar laminae of the owl (Tyto alba) and chicken (Gallus gallus) tectum. Immunohistochemical analysis of identified proteins can provide clues about cell types and circuit layout of the avian optic tectum in general. As the optic tectum of nonmammals is homologous to the superior colliculus of mammals, the analysis of the tectal and collicular proteome may provide clues about conserved cell and circuit layout, circuit function, and evolution.

KW - Circuit function

KW - Optic tectum

KW - Proteome

KW - Taeniopygia guttata

KW - Zebra finch

UR - http://www.scopus.com/inward/record.url?scp=34250825382&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=34250825382&partnerID=8YFLogxK

U2 - 10.1021/pr070126w

DO - 10.1021/pr070126w

M3 - Article

C2 - 17497909

AN - SCOPUS:34250825382

VL - 6

SP - 2341

EP - 2350

JO - Journal of Proteome Research

JF - Journal of Proteome Research

SN - 1535-3893

IS - 6

ER -