Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA

Vikas Sood, Hoshang Unwalla, Nidhi Gupta, Samitabh Chakraborti, Akhil C. Banerjea

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

OBJECTIVE: Ribozymes (Rzs) and DNA-enzymes (Dzs) possess the ability to prevent gene expression by cleaving target RNA in a catalytic and sequence-specific manner. Although Rzs or Dzs have been used earlier for HIV-1 gene suppression, the present study explored the possibility of using catalytic RNA and DNA simultaneously in a synergistic manner with the hope that this novel approach will allow more potent inhibition for a longer duration. METHODS: In order to achieve long-term inhibition of HIV-1 replication, a novel non-GUX hammerhead Rz was designed by standard recombinant DNA technology and cloned it under the powerful CMV promoter containing expression vector. A 10-23 catalytic motif containing Dz that was targeted against the conserved second exon of HIV-1 Tat/Rev region was also assembled. RESULTS: Both Rz and Dz possessed sequence-specific cleavage activities individually and simultaneously cleaved target RNA in a synergistic manner under the same in vitro cleavage conditions. These catalytic molecules inhibited HIV-1 replication in macrophages individually and exhibited potent inhibitory effects when used in combination. CONCLUSIONS: The combination strategy described here can be widely used against any target RNA to achieve more effective gene inhibition that exploits the simultaneous sequence-specific cleavage potentials of catalytic RNA and DNA.

Original languageEnglish
Pages (from-to)31-40
Number of pages10
JournalAIDS
Volume21
Issue number1
DOIs
StatePublished - Jan 1 2007

Fingerprint

Catalytic DNA
Catalytic RNA
HIV-1
RNA
Recombinant DNA
Genes
Exons
Macrophages
Technology
Gene Expression
DNA
Enzymes

Keywords

  • DNA-enzymes
  • HIV
  • Rev
  • Ribozymes
  • Tat

ASJC Scopus subject areas

  • Immunology and Allergy
  • Immunology

Cite this

Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA. / Sood, Vikas; Unwalla, Hoshang; Gupta, Nidhi; Chakraborti, Samitabh; Banerjea, Akhil C.

In: AIDS, Vol. 21, No. 1, 01.01.2007, p. 31-40.

Research output: Contribution to journalArticle

Sood, Vikas ; Unwalla, Hoshang ; Gupta, Nidhi ; Chakraborti, Samitabh ; Banerjea, Akhil C. / Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA. In: AIDS. 2007 ; Vol. 21, No. 1. pp. 31-40.
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