NNcon: Improved protein contact map prediction using 2D-recursive neural networks

Allison N. Tegge, Zheng Wang, Jesse Eickholt, Jianlin Cheng

Research output: Contribution to journalArticle

94 Citations (Scopus)

Abstract

Protein contact map prediction is useful for protein folding rate prediction, model selection and 3D structure prediction. Here we describe NNcon, a fast and reliable contact map prediction server and software. NNcon was ranked among the most accurate residue contact predictors in the Eighth Critical Assessment of Techniques for Protein Structure Prediction (CASP8), 2008. Both NNcon server and software are available at http://casp.rnet.missouri.edu/nncon.html.

Original languageEnglish (US)
JournalNucleic Acids Research
Volume37
Issue numberSUPPL. 2
DOIs
StatePublished - Aug 4 2009
Externally publishedYes

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Software
Protein Folding
Proteins

ASJC Scopus subject areas

  • Genetics

Cite this

NNcon : Improved protein contact map prediction using 2D-recursive neural networks. / Tegge, Allison N.; Wang, Zheng; Eickholt, Jesse; Cheng, Jianlin.

In: Nucleic Acids Research, Vol. 37, No. SUPPL. 2, 04.08.2009.

Research output: Contribution to journalArticle

Tegge, Allison N. ; Wang, Zheng ; Eickholt, Jesse ; Cheng, Jianlin. / NNcon : Improved protein contact map prediction using 2D-recursive neural networks. In: Nucleic Acids Research. 2009 ; Vol. 37, No. SUPPL. 2.
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