Mechanism of RNA primer removal by the RNase H activity of avian myeloblastosis virus reverse transcriptase

J. J. Champoux, E. Gilboa, D. Baltimore

Research output: Contribution to journalArticle

50 Scopus citations

Abstract

The single-stranded DNA containing the Moloney murine leukemia virus origin for plus-strand synthesis was cloned in M13mp2 and used as a template for avian myeloblastosis virus reverse transcriptase in the presence of Moloney RNA which had been treated with pancreatic RNase A. The RNA pieces containing the polypyrine stretch near the plus-strand origin were processed, presumably by RNase H, to generate primers for DNA synthesis which initiated both at the correct origin site and at one nucleotide downstream from the correct site. Approximately 50% of the labeled DNA fragments synthesized under these conditions retained the priming RNA on their 5' ends. When the isolated fragments were hybridized back to the template DNA and again treated with the reverse transcriptase, all of the RNA was removed from the labeled DNA. By using 5'-end-labeled pancreatic RNase A-resistant fragments, it was possible to show that the RNA primers were removed intact. It appears from these results that the RNase H activity associated with the enzyme shows a preference for cutting at the junction between the RNA and DNA moieties of such complexes and therefore is ideally suited for removing RNA primers.

Original languageEnglish (US)
Pages (from-to)686-691
Number of pages6
JournalJournal of virology
Volume49
Issue number3
DOIs
StatePublished - 1984

ASJC Scopus subject areas

  • Microbiology
  • Immunology
  • Insect Science
  • Virology

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