Lossless compression of DNA Microarray images with inversion coder

Basar Koc; Ziya Arnavut; Huseyin Kocak

doi:10.1109/HONET.2014.7029387

Lossless compression of DNA Microarray images with inversion coder

Basar Koc, Ziya Arnavut, Huseyin Kocak

Computer Science

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

1 Scopus citations

Abstract

DNA Microarray images are used to identify and monitor gene activity, or expression. In a single experiment, a large number of microarray images may be produced. Storage and archiving of these images are an important problem for researchers. Since microarray images can have a wide variety of nearly random patterns with no discernible structures, general entropy coders, e.g. Bzip2, or generic image compressors, e.g. JPEG-LS, do not perform well. In this work, we investigate performance of the inversion coding technique in lossless compression of DNA microarray images. We show that inversion coding outperforms commonly used entropy coders and image compressors.

Original language	English (US)
Title of host publication	2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	186-189
Number of pages	4
ISBN (Electronic)	9781479969401
DOIs	https://doi.org/10.1109/HONET.2014.7029387
State	Published - Feb 2 2014
Event	2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014 - Charlotte, United States Duration: Dec 15 2014 → Dec 17 2014

Publication series

Name	2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014

Other

Other	2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014
Country/Territory	United States
City	Charlotte
Period	12/15/14 → 12/17/14

Keywords

BWIC
Block-sorting
DNA Microarray Images
Inversion Ranks
Lossless Compression

ASJC Scopus subject areas

Computer Networks and Communications
Electrical and Electronic Engineering
Electronic, Optical and Magnetic Materials

Access to Document

10.1109/HONET.2014.7029387

Cite this

Koc, B., Arnavut, Z., & Kocak, H. (2014). Lossless compression of DNA Microarray images with inversion coder. In 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014 (pp. 186-189). [7029387] (2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/HONET.2014.7029387

Lossless compression of DNA Microarray images with inversion coder. / Koc, Basar; Arnavut, Ziya; Kocak, Huseyin.

2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014. Institute of Electrical and Electronics Engineers Inc., 2014. p. 186-189 7029387 (2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Koc, B, Arnavut, Z & Kocak, H 2014, Lossless compression of DNA Microarray images with inversion coder. in 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014., 7029387, 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014, Institute of Electrical and Electronics Engineers Inc., pp. 186-189, 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014, Charlotte, United States, 12/15/14. https://doi.org/10.1109/HONET.2014.7029387

Koc B, Arnavut Z, Kocak H. Lossless compression of DNA Microarray images with inversion coder. In 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014. Institute of Electrical and Electronics Engineers Inc. 2014. p. 186-189. 7029387. (2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014). https://doi.org/10.1109/HONET.2014.7029387

Koc, Basar ; Arnavut, Ziya ; Kocak, Huseyin. / Lossless compression of DNA Microarray images with inversion coder. 2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014. Institute of Electrical and Electronics Engineers Inc., 2014. pp. 186-189 (2014 11th Annual High Capacity Optical Networks and Emerging/Enabling Technologies (Photonics for Energy), HONET-PfE 2014).

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Lossless compression of DNA Microarray images with inversion coder

Abstract

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Keywords

ASJC Scopus subject areas

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