Lossless compression of DNA microarray images with inversion coder

Basar Koc, Ziya Arnavut, Huseyin Kocak

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

DNA microarray images are used to identify and monitor gene activity, or expression. In this study, we investigate the performance of the inversion coding technique in lossless compression of DNA microarray images. We show that inversion coding outperforms commonly used entropy coders and generic image compressors.

Original languageEnglish (US)
Title of host publicationData Compression Conference Proceedings
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages411
Number of pages1
ISBN (Print)9781479938827
DOIs
StatePublished - 2014
Event2014 Data Compression Conference, DCC 2014 - Snowbird, UT, United States
Duration: Mar 26 2014Mar 28 2014

Other

Other2014 Data Compression Conference, DCC 2014
CountryUnited States
CitySnowbird, UT
Period3/26/143/28/14

Fingerprint

Microarrays
DNA
Compressors
Entropy
Genes

Keywords

  • BWIC
  • Image compression
  • Inversion coder
  • Microarray Images

ASJC Scopus subject areas

  • Computer Networks and Communications

Cite this

Koc, B., Arnavut, Z., & Kocak, H. (2014). Lossless compression of DNA microarray images with inversion coder. In Data Compression Conference Proceedings (pp. 411). [6824463] Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/DCC.2014.59

Lossless compression of DNA microarray images with inversion coder. / Koc, Basar; Arnavut, Ziya; Kocak, Huseyin.

Data Compression Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 2014. p. 411 6824463.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Koc, B, Arnavut, Z & Kocak, H 2014, Lossless compression of DNA microarray images with inversion coder. in Data Compression Conference Proceedings., 6824463, Institute of Electrical and Electronics Engineers Inc., pp. 411, 2014 Data Compression Conference, DCC 2014, Snowbird, UT, United States, 3/26/14. https://doi.org/10.1109/DCC.2014.59
Koc B, Arnavut Z, Kocak H. Lossless compression of DNA microarray images with inversion coder. In Data Compression Conference Proceedings. Institute of Electrical and Electronics Engineers Inc. 2014. p. 411. 6824463 https://doi.org/10.1109/DCC.2014.59
Koc, Basar ; Arnavut, Ziya ; Kocak, Huseyin. / Lossless compression of DNA microarray images with inversion coder. Data Compression Conference Proceedings. Institute of Electrical and Electronics Engineers Inc., 2014. pp. 411
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