GenSensor suite: A web-based tool for the analysis of gene and protein interactions, pathways, and regulation

Mark Gosink, Sawsan Khuri, Camilo Valdes, Zhijie Jiang, Nicholas F. Tsinoremas

Research output: Contribution to journalArticle

7 Scopus citations

Abstract

The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which biochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list. All common gene sets are available for searching in GenPath, plus some specialized sets. Users can add custom background lists. GenInteract builds an interaction gene list from a single gene input and then analyzes this in GenPath. GenPubMed uses a PubMed query to identify a list of PubMed IDs, from which a gene list is extracted and queried in GenPath. GenViewer allows the user to query one gene set against another in GenPath. GenPath results are presented with relevant P- and q-values in an uncluttered, fully linked, and integrated table. Users can easily copy this table and paste it directly into a spreadsheet or document.

Original languageEnglish (US)
Article number271563
JournalAdvances in Bioinformatics
Volume2011
DOIs
StatePublished - 2011

ASJC Scopus subject areas

  • Biomedical Engineering
  • Biochemistry, Genetics and Molecular Biology (miscellaneous)
  • Computer Science Applications

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