Genomic approaches with natural fish populations from polluted environments

Goran Bozinovic, Marjorie F Oleksiak

Research output: Contribution to journalArticle

16 Citations (Scopus)

Abstract

Transcriptomics and population genomics are two complementary genomic approaches that can be used to gain insight into pollutant effects in natural populations. Transcriptomics identify altered gene expression pathways, and population genomics approaches more directly target the causative genomic polymorphisms. Neither approach is restricted to a predetermined set of genes or loci. Instead, both approaches allow a broad overview of genomic processes. Transcriptomics and population genomic approaches have been used to explore genomic responses in populations of fish from polluted environments and have identified sets of candidate genes and loci that appear biologically important in response to pollution. Often differences in gene expression or loci between polluted and reference populations are not conserved among polluted populations, suggesting a biological complexity that we do not yet fully understand. As genomic approaches become less expensive with the advent of new sequencing and genotyping technologies, they will be more widely used in complementary studies. However, although these genomic approaches are immensely powerful for identifying candidate genes and loci, the challenge of determining biological mechanisms that link genotypes and phenotypes remains.

Original languageEnglish
Pages (from-to)283-289
Number of pages7
JournalEnvironmental Toxicology and Chemistry
Volume30
Issue number2
DOIs
StatePublished - Feb 1 2011

Fingerprint

Metagenomics
Fish
genomics
Fishes
Genes
Gene expression
fish
Population
Polymorphism
Gene Expression
Pollution
gene expression
gene
Genotype
Technology
Phenotype
Genomics
phenotype
polymorphism
genotype

Keywords

  • Fundulus heteroclitus
  • Genomics
  • Natural populations
  • Pollution

ASJC Scopus subject areas

  • Health, Toxicology and Mutagenesis
  • Environmental Chemistry

Cite this

Genomic approaches with natural fish populations from polluted environments. / Bozinovic, Goran; Oleksiak, Marjorie F.

In: Environmental Toxicology and Chemistry, Vol. 30, No. 2, 01.02.2011, p. 283-289.

Research output: Contribution to journalArticle

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