Abstract
A curated set of 81 proven and 44 predicted lipoproteins of Escherichia coli K-12 was defined with the combined use of a literature survey, a variety of predictive tools and human expertise. The well-documented Gram-negative proteome of E. coli K-12 was chosen to assess how the different approaches complement each other and to ensure a stable definition of a consistent set of lipoproteins. The results of detailed analysis of such proteins at the level of a single proteome are presented, corroborated and rationalized.
| Original language | English (US) |
|---|---|
| Pages (from-to) | 1597-1613 |
| Number of pages | 17 |
| Journal | Proteomics |
| Volume | 4 |
| Issue number | 6 |
| DOIs | |
| State | Published - Jun 1 2004 |
Keywords
- Bacterial proteome
- Curated set
- Lipoprotein
- Signal prediction
ASJC Scopus subject areas
- Molecular Biology
- Genetics
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Gonnet, P., Rudd, K. E., & Lisacek, F. (2004). Fine-tuning the prediction of sequences cleaved by signal peptidase II: A curated set of proven and predicted lipoproteins of Escherichia coli K-12. Proteomics, 4(6), 1597-1613. https://doi.org/10.1002/pmic.200300749