Escherichia coli K-12

A cooperatively developed annotation snapshot - 2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K B Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Research output: Contribution to journalArticle

369 Citations (Scopus)

Abstract

The goal of this group project has been to coordinate and bring up-to-date information on all genes of Escherichia coliK-12. Annotation of the genome of an organism entails identification of genes, the boundaries of genes in terms of precise start and end sites, and description of the gene products. Known and predicted functions were assigned to each gene product on the basis of experimental evidence or sequence analysis. Since both kinds of evidence are constantly expanding, no annotation is complete at any moment in time. This is a snapshot analysis based on the most recent genome sequences of two E.coli K-12 bacteria. An accurate and up-to-date description of E. coli K-12 genes is of particular importance to the scientific community because experimentally determined properties of its gene products provide fundamental information for annotation of innumerable genes of other organisms. Availability of the complete genome sequence of two K-12 strains allows comparison of their genotypes and mutant status of alleles.

Original languageEnglish
Pages (from-to)1-9
Number of pages9
JournalNucleic Acids Research
Volume34
Issue number1
DOIs
StatePublished - Jan 1 2006
Externally publishedYes

Fingerprint

Escherichia coli
Genes
Genome
Molecular Sequence Annotation
Escherichia
Sequence Analysis
Alleles
Genotype
Bacteria

ASJC Scopus subject areas

  • Genetics

Cite this

Riley, M., Abe, T., Arnaud, M. B., Berlyn, M. K. B., Blattner, F. R., Chaudhuri, R. R., ... Wanner, B. L. (2006). Escherichia coli K-12: A cooperatively developed annotation snapshot - 2005. Nucleic Acids Research, 34(1), 1-9. https://doi.org/10.1093/nar/gkj405

Escherichia coli K-12 : A cooperatively developed annotation snapshot - 2005. / Riley, Monica; Abe, Takashi; Arnaud, Martha B.; Berlyn, Mary K B; Blattner, Frederick R.; Chaudhuri, Roy R.; Glasner, Jeremy D.; Horiuchi, Takashi; Keseler, Ingrid M.; Kosuge, Takehide; Mori, Hirotada; Perna, Nicole T.; Plunkett, Guy; Rudd, Kenneth E.; Serres, Margrethe H.; Thomas, Gavin H.; Thomson, Nicholas R.; Wishart, David; Wanner, Barry L.

In: Nucleic Acids Research, Vol. 34, No. 1, 01.01.2006, p. 1-9.

Research output: Contribution to journalArticle

Riley, M, Abe, T, Arnaud, MB, Berlyn, MKB, Blattner, FR, Chaudhuri, RR, Glasner, JD, Horiuchi, T, Keseler, IM, Kosuge, T, Mori, H, Perna, NT, Plunkett, G, Rudd, KE, Serres, MH, Thomas, GH, Thomson, NR, Wishart, D & Wanner, BL 2006, 'Escherichia coli K-12: A cooperatively developed annotation snapshot - 2005', Nucleic Acids Research, vol. 34, no. 1, pp. 1-9. https://doi.org/10.1093/nar/gkj405
Riley M, Abe T, Arnaud MB, Berlyn MKB, Blattner FR, Chaudhuri RR et al. Escherichia coli K-12: A cooperatively developed annotation snapshot - 2005. Nucleic Acids Research. 2006 Jan 1;34(1):1-9. https://doi.org/10.1093/nar/gkj405
Riley, Monica ; Abe, Takashi ; Arnaud, Martha B. ; Berlyn, Mary K B ; Blattner, Frederick R. ; Chaudhuri, Roy R. ; Glasner, Jeremy D. ; Horiuchi, Takashi ; Keseler, Ingrid M. ; Kosuge, Takehide ; Mori, Hirotada ; Perna, Nicole T. ; Plunkett, Guy ; Rudd, Kenneth E. ; Serres, Margrethe H. ; Thomas, Gavin H. ; Thomson, Nicholas R. ; Wishart, David ; Wanner, Barry L. / Escherichia coli K-12 : A cooperatively developed annotation snapshot - 2005. In: Nucleic Acids Research. 2006 ; Vol. 34, No. 1. pp. 1-9.
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