EcoGene-RefSeq: EcoGene tools applied to the RefSeq prokaryotic genomes

Jindan Zhou, Andrew J. Richardson, Kenneth E. Rudd

Research output: Contribution to journalArticlepeer-review

6 Scopus citations

Abstract

EcoGene.org is a genome database and website dedicated to Escherichia coli K-12 substrain MG1655 that is revised daily using information derived from the biomedical literature and in-house analysis. EcoGene is a major source of annotation updates for the MG1655 Genbank record, one of only a few Genbank genome records that are updated by a community effort. The Reference Sequence (RefSeq) database, built by The National Center for Biotechnology Information, comprises a set of duplicate Genbank genome records that can be modified by the NCBI staff annotators. EcoGene-RefSeq is being developed as a stand-alone internet resource to facilitate the usage of EcoGene-based tools on any of the >2400 completed prokaryotic genome records that are currently available at the RefSeq database.Availability: The web interface of EcoGene-RefSeq is available at http://www.ecogene.org/refseq.Contact: or j.zhou1@miami.edu

Original languageEnglish (US)
Pages (from-to)1917-1918
Number of pages2
JournalBioinformatics
Volume29
Issue number15
DOIs
StatePublished - Aug 1 2013
Externally publishedYes

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

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