Challenges in small screening laboratories: Implementing an on-demand laboratory information management system

Vance P. Lemmon, Yuanyuan Jia, Yan Shi, S. Douglas Holbrook, John L. Bixby, William Buchser

Research output: Contribution to journalArticle

2 Scopus citations

Abstract

The Miami Project to Cure Paralysis, part of the University of Miami Miller School of Medicine, includes a laboratory devoted to High Content Analysis (HCA) of neurons. The goal of the laboratory is to uncover signaling pathways, genes, compounds, or drugs that can be used to promote nerve growth. HCA permits the quantification of neuronal morphology, including the lengths and numbers of axons. HCA of various libraries on primary neurons requires a team-based approach, a variety of process steps and complex manipulations of cells and libraries to obtain meaningful results. HCA itself produces vast amounts of information including images, well-based data and cell-based phenotypic measures. Documenting and integrating the experimental workflows, library data and extensive experimental results is challenging. For academic laboratories generating large data sets from experiments involving thousands of perturbagens, a Laboratory Information Management System (LIMS) is the data tracking solution of choice. With both productivity and efficiency as driving rationales, the Miami Project has equipped its HCA laboratory with an On Demand or Software As A Service (SaaS) LIMS to ensure the quality of its experiments and workflows. The article discusses how the system was selected and integrated into the laboratory. The advantages of a SaaS based LIMS over a client-server based system are described.

Original languageEnglish (US)
Pages (from-to)742-748
Number of pages7
JournalCombinatorial Chemistry and High Throughput Screening
Volume14
Issue number9
DOIs
StatePublished - Nov 1 2011

Keywords

  • Good laboratory practice
  • High content analysis
  • Laboratory information management system
  • On demand
  • Software as a service
  • Spinal cord injury

ASJC Scopus subject areas

  • Organic Chemistry
  • Drug Discovery
  • Computer Science Applications

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