Abstract
The Cell Line Ontology (CLO) is a community-based ontology in the domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include the Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, with the Jurkat cell line as an example. Currently CLO contains over 36.000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and by manual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications.
| Original language | English (US) |
|---|---|
| Title of host publication | CEUR Workshop Proceedings |
| Pages | 25-32 |
| Number of pages | 8 |
| Volume | 833 |
| State | Published - 2011 |
| Event | 2nd International Conference on Biomedical Ontology, ICBO 2011 - Buffalo, NY, United States Duration: Jul 26 2011 → Jul 30 2011 |
Other
| Other | 2nd International Conference on Biomedical Ontology, ICBO 2011 |
|---|---|
| Country | United States |
| City | Buffalo, NY |
| Period | 7/26/11 → 7/30/11 |
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Keywords
- Cell line
- Cell line ontology
- CLO
ASJC Scopus subject areas
- Computer Science(all)
Cite this
Cell line ontology : Redesigning the cell line knowledgebase to aid integrative translational informatics. / Sarntivijai, Sirarat; Xiang, Zuoshuang; Meehan, Terrence F.; Diehl, Alexander D.; Vempati, Uma; Schuerer, Stephan C; Pang, Chao; Malone, James; Parkinson, Helen; Athey, Brian D.; He, Yongqun.
CEUR Workshop Proceedings. Vol. 833 2011. p. 25-32.Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Cell line ontology
T2 - Redesigning the cell line knowledgebase to aid integrative translational informatics
AU - Sarntivijai, Sirarat
AU - Xiang, Zuoshuang
AU - Meehan, Terrence F.
AU - Diehl, Alexander D.
AU - Vempati, Uma
AU - Schuerer, Stephan C
AU - Pang, Chao
AU - Malone, James
AU - Parkinson, Helen
AU - Athey, Brian D.
AU - He, Yongqun
PY - 2011
Y1 - 2011
N2 - The Cell Line Ontology (CLO) is a community-based ontology in the domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include the Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, with the Jurkat cell line as an example. Currently CLO contains over 36.000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and by manual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications.
AB - The Cell Line Ontology (CLO) is a community-based ontology in the domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include the Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, with the Jurkat cell line as an example. Currently CLO contains over 36.000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and by manual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications.
KW - Cell line
KW - Cell line ontology
KW - CLO
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UR - http://www.scopus.com/inward/citedby.url?scp=84891771630&partnerID=8YFLogxK
M3 - Conference contribution
AN - SCOPUS:84891771630
VL - 833
SP - 25
EP - 32
BT - CEUR Workshop Proceedings
ER -