Abstract
BARD, the BioAssay Research Database (https://bard.nih.gov/) is a public database and suite of tools developed to provide access to bioassay data produced by the NIH Molecular Libraries Program (MLP). Data from 631 MLP projects were migrated to a new structured vocabulary designed to capture bioassay data in a formalized manner, with particular emphasis placed on the description of assay protocols. New data can be submitted to BARD with a user-friendly set of tools that assist in the creation of appropriately formatted datasets and assay definitions. Data published through the BARD application program interface (API) can be accessed by researchers using web-based query tools or a desktop client. Thirdparty developers wishing to create new tools can use the API to produce stand-alone tools or new plug-ins that can be integrated into BARD. The entire BARD suite of tools therefore supports three classes of researcher: those who wish to publish data, those who wish to mine data for testable hypotheses, and those in the developer community who wish to build tools that leverage this carefully curated chemical biology resource.
| Original language | English (US) |
|---|---|
| Pages (from-to) | D1163-D1170 |
| Journal | Nucleic Acids Research |
| Volume | 43 |
| Issue number | D1 |
| DOIs | |
| State | Published - Jan 28 2015 |
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ASJC Scopus subject areas
- Genetics
Cite this
BioAssay Research Database (BARD) : Chemical biology and probe-development enabled by structured metadata and result types. / Howe, E. A.; De Souza, A.; Lahr, D. L.; Chatwin, S.; Montgomery, P.; Alexander, B. R.; Nguyen, D. T.; Cruz, Y.; Stonich, D. A.; Walzer, G.; Rose, J. T.; Picard, S. C.; Liu, Z.; Rose, J. N.; Xiang, X.; Asiedu, J.; Durkin, D.; Levine, J.; Yang, J. J.; Schuerer, Stephan C; Braisted, J. C.; Southall, N.; Southern, M. R.; Chung, T. D Y; Brudz, S.; Tanega, C.; Schreiber, S. L.; Bittker, J. A.; Guha, R.; Clemons, P. A.
In: Nucleic Acids Research, Vol. 43, No. D1, 28.01.2015, p. D1163-D1170.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - BioAssay Research Database (BARD)
T2 - Chemical biology and probe-development enabled by structured metadata and result types
AU - Howe, E. A.
AU - De Souza, A.
AU - Lahr, D. L.
AU - Chatwin, S.
AU - Montgomery, P.
AU - Alexander, B. R.
AU - Nguyen, D. T.
AU - Cruz, Y.
AU - Stonich, D. A.
AU - Walzer, G.
AU - Rose, J. T.
AU - Picard, S. C.
AU - Liu, Z.
AU - Rose, J. N.
AU - Xiang, X.
AU - Asiedu, J.
AU - Durkin, D.
AU - Levine, J.
AU - Yang, J. J.
AU - Schuerer, Stephan C
AU - Braisted, J. C.
AU - Southall, N.
AU - Southern, M. R.
AU - Chung, T. D Y
AU - Brudz, S.
AU - Tanega, C.
AU - Schreiber, S. L.
AU - Bittker, J. A.
AU - Guha, R.
AU - Clemons, P. A.
PY - 2015/1/28
Y1 - 2015/1/28
N2 - BARD, the BioAssay Research Database (https://bard.nih.gov/) is a public database and suite of tools developed to provide access to bioassay data produced by the NIH Molecular Libraries Program (MLP). Data from 631 MLP projects were migrated to a new structured vocabulary designed to capture bioassay data in a formalized manner, with particular emphasis placed on the description of assay protocols. New data can be submitted to BARD with a user-friendly set of tools that assist in the creation of appropriately formatted datasets and assay definitions. Data published through the BARD application program interface (API) can be accessed by researchers using web-based query tools or a desktop client. Thirdparty developers wishing to create new tools can use the API to produce stand-alone tools or new plug-ins that can be integrated into BARD. The entire BARD suite of tools therefore supports three classes of researcher: those who wish to publish data, those who wish to mine data for testable hypotheses, and those in the developer community who wish to build tools that leverage this carefully curated chemical biology resource.
AB - BARD, the BioAssay Research Database (https://bard.nih.gov/) is a public database and suite of tools developed to provide access to bioassay data produced by the NIH Molecular Libraries Program (MLP). Data from 631 MLP projects were migrated to a new structured vocabulary designed to capture bioassay data in a formalized manner, with particular emphasis placed on the description of assay protocols. New data can be submitted to BARD with a user-friendly set of tools that assist in the creation of appropriately formatted datasets and assay definitions. Data published through the BARD application program interface (API) can be accessed by researchers using web-based query tools or a desktop client. Thirdparty developers wishing to create new tools can use the API to produce stand-alone tools or new plug-ins that can be integrated into BARD. The entire BARD suite of tools therefore supports three classes of researcher: those who wish to publish data, those who wish to mine data for testable hypotheses, and those in the developer community who wish to build tools that leverage this carefully curated chemical biology resource.
UR - http://www.scopus.com/inward/record.url?scp=84946035207&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84946035207&partnerID=8YFLogxK
U2 - 10.1093/nar/gku1244
DO - 10.1093/nar/gku1244
M3 - Article
C2 - 25477388
AN - SCOPUS:84946035207
VL - 43
SP - D1163-D1170
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - D1
ER -