Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP).

Stephen P. Daiger, Sara J. Bowne, Lori S. Sullivan, Susan H Blanton, George M. Weinstock, Daniel C. Koboldt, Robert S. Fulton, David Larsen, Peter Humphries, Marian M. Humphries, Eric A. Pierce, Rui Chen, Yumei Li

Research output: Contribution to journalArticle

19 Citations (Scopus)

Abstract

The goal of our research is to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP). For this purpose we established a cohort of more than 250 independently ascertained families with adRP in the Houston Laboratory for Molecular Diagnosis of Inherited Eye Diseases. Affected members of each family were screened for disease-causing mutations in genes and gene regions that are commonly associated with adRP. By this approach, we detected mutations in 65 % of the families, leaving 85 families that are likely to harbor mutations outside of the "common" regions or in novel genes. Of these, 32 families were tested by several types of next-generation sequencing (NGS), including (a) targeted polymerase chain reaction (PCR) NGS, (b) whole exome NGS, and (c) targeted retinal-capture NGS. We detected mutations in 11 of these families (31 %) bringing the total detected in the adRP cohort to 70 %. Several large families have also been tested for linkage using Afymetrix single nucleotide polymorphism (SNP) arrays.

Original languageEnglish
Pages (from-to)123-129
Number of pages7
JournalAdvances in Experimental Medicine and Biology
Volume801
DOIs
StatePublished - Jan 1 2014

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Retinitis Pigmentosa
Genes
Mutation
Polymerase chain reaction
Ports and harbors
Polymorphism
Nucleotides
Exome
Eye Diseases
Clinical Laboratory Techniques
Single Nucleotide Polymorphism
Polymerase Chain Reaction
Research

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP). / Daiger, Stephen P.; Bowne, Sara J.; Sullivan, Lori S.; Blanton, Susan H; Weinstock, George M.; Koboldt, Daniel C.; Fulton, Robert S.; Larsen, David; Humphries, Peter; Humphries, Marian M.; Pierce, Eric A.; Chen, Rui; Li, Yumei.

In: Advances in Experimental Medicine and Biology, Vol. 801, 01.01.2014, p. 123-129.

Research output: Contribution to journalArticle

Daiger, SP, Bowne, SJ, Sullivan, LS, Blanton, SH, Weinstock, GM, Koboldt, DC, Fulton, RS, Larsen, D, Humphries, P, Humphries, MM, Pierce, EA, Chen, R & Li, Y 2014, 'Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP).', Advances in Experimental Medicine and Biology, vol. 801, pp. 123-129. https://doi.org/10.1007/978-1-4614-3209-8_16
Daiger, Stephen P. ; Bowne, Sara J. ; Sullivan, Lori S. ; Blanton, Susan H ; Weinstock, George M. ; Koboldt, Daniel C. ; Fulton, Robert S. ; Larsen, David ; Humphries, Peter ; Humphries, Marian M. ; Pierce, Eric A. ; Chen, Rui ; Li, Yumei. / Application of next-generation sequencing to identify genes and mutations causing autosomal dominant retinitis pigmentosa (adRP). In: Advances in Experimental Medicine and Biology. 2014 ; Vol. 801. pp. 123-129.
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