A dominant role for CD8+-T-lymphocyte selection in simian immunodeficiency virus sequence variation

David H. O'Connor; Adrian B. McDermott; Kendall C. Krebs; Elizabeth J. Dodds; Jacqueline E. Miller; Edna J. Gonzalez; Timothy J. Jacoby; Levi Yant; Helen Piontkivska; Ralph Pantophlet; Dennis R. Burton; William M. Rehrauer; Nancy Wilson; Austin L. Hughes; David I. Watkins

doi:10.1128/JVI.78.24.14012-14022.2004

A dominant role for CD8⁺-T-lymphocyte selection in simian immunodeficiency virus sequence variation

David H. O'Connor, Adrian B. McDermott, Kendall C. Krebs, Elizabeth J. Dodds, Jacqueline E. Miller, Edna J. Gonzalez, Timothy J. Jacoby, Levi Yant, Helen Piontkivska, Ralph Pantophlet, Dennis R. Burton, William M. Rehrauer, Nancy Wilson, Austin L. Hughes, David I. Watkins

Research output: Contribution to journal › Article › peer-review

83 Scopus citations

Abstract

CD8⁺ T lymphocytes (CD8-TL) select viral escape variants in both human immunodeficiency virus and simian immunodeficiency virus (SIV) infections. The frequency of CD8-TL viral escape as well as the contribution of escape to overall virus diversification has not been assessed. We quantified CD8-TL selection in SIV infections by sequencing viral genomes from 35 SIVmac239-infected animals at the time of euthanasia. Here we show that positive selection for sequences encoding 46 known CD8-TL epitopes is comparable to the positive selection observed for the variable loops of env. We also found that >60% of viral variation outside of the viral envelope occurs within recognized CD8-TL epitopes. Therefore, we conclude that CD8-TL selection is the dominant cause of SIV diversification outside of the envelope.

Original language	English (US)
Pages (from-to)	14012-14022
Number of pages	11
Journal	Journal of virology
Volume	78
Issue number	24
DOIs	https://doi.org/10.1128/JVI.78.24.14012-14022.2004
State	Published - Dec 2004
Externally published	Yes

ASJC Scopus subject areas

Microbiology
Immunology
Insect Science
Virology

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1128/JVI.78.24.14012-14022.2004

Cite this

O'Connor, D. H., McDermott, A. B., Krebs, K. C., Dodds, E. J., Miller, J. E., Gonzalez, E. J., Jacoby, T. J., Yant, L., Piontkivska, H., Pantophlet, R., Burton, D. R., Rehrauer, W. M., Wilson, N., Hughes, A. L., & Watkins, D. I. (2004). A dominant role for CD8⁺-T-lymphocyte selection in simian immunodeficiency virus sequence variation. Journal of virology, 78(24), 14012-14022. https://doi.org/10.1128/JVI.78.24.14012-14022.2004

A dominant role for CD8⁺-T-lymphocyte selection in simian immunodeficiency virus sequence variation. / O'Connor, David H.; McDermott, Adrian B.; Krebs, Kendall C.; Dodds, Elizabeth J.; Miller, Jacqueline E.; Gonzalez, Edna J.; Jacoby, Timothy J.; Yant, Levi; Piontkivska, Helen; Pantophlet, Ralph; Burton, Dennis R.; Rehrauer, William M.; Wilson, Nancy; Hughes, Austin L.; Watkins, David I.

In: Journal of virology, Vol. 78, No. 24, 12.2004, p. 14012-14022.

Research output: Contribution to journal › Article › peer-review

O'Connor, DH, McDermott, AB, Krebs, KC, Dodds, EJ, Miller, JE, Gonzalez, EJ, Jacoby, TJ, Yant, L, Piontkivska, H, Pantophlet, R, Burton, DR, Rehrauer, WM, Wilson, N, Hughes, AL & Watkins, DI 2004, 'A dominant role for CD8⁺-T-lymphocyte selection in simian immunodeficiency virus sequence variation', Journal of virology, vol. 78, no. 24, pp. 14012-14022. https://doi.org/10.1128/JVI.78.24.14012-14022.2004

O'Connor, David H. ; McDermott, Adrian B. ; Krebs, Kendall C. ; Dodds, Elizabeth J. ; Miller, Jacqueline E. ; Gonzalez, Edna J. ; Jacoby, Timothy J. ; Yant, Levi ; Piontkivska, Helen ; Pantophlet, Ralph ; Burton, Dennis R. ; Rehrauer, William M. ; Wilson, Nancy ; Hughes, Austin L. ; Watkins, David I. / A dominant role for CD8⁺-T-lymphocyte selection in simian immunodeficiency virus sequence variation. In: Journal of virology. 2004 ; Vol. 78, No. 24. pp. 14012-14022.

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abstract = "CD8+ T lymphocytes (CD8-TL) select viral escape variants in both human immunodeficiency virus and simian immunodeficiency virus (SIV) infections. The frequency of CD8-TL viral escape as well as the contribution of escape to overall virus diversification has not been assessed. We quantified CD8-TL selection in SIV infections by sequencing viral genomes from 35 SIVmac239-infected animals at the time of euthanasia. Here we show that positive selection for sequences encoding 46 known CD8-TL epitopes is comparable to the positive selection observed for the variable loops of env. We also found that >60% of viral variation outside of the viral envelope occurs within recognized CD8-TL epitopes. Therefore, we conclude that CD8-TL selection is the dominant cause of SIV diversification outside of the envelope.",

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AU - Krebs, Kendall C.

AU - Dodds, Elizabeth J.

AU - Miller, Jacqueline E.

AU - Gonzalez, Edna J.

AU - Jacoby, Timothy J.

AU - Yant, Levi

AU - Piontkivska, Helen

AU - Pantophlet, Ralph

AU - Burton, Dennis R.

AU - Rehrauer, William M.

AU - Wilson, Nancy

AU - Hughes, Austin L.

AU - Watkins, David I.

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AB - CD8+ T lymphocytes (CD8-TL) select viral escape variants in both human immunodeficiency virus and simian immunodeficiency virus (SIV) infections. The frequency of CD8-TL viral escape as well as the contribution of escape to overall virus diversification has not been assessed. We quantified CD8-TL selection in SIV infections by sequencing viral genomes from 35 SIVmac239-infected animals at the time of euthanasia. Here we show that positive selection for sequences encoding 46 known CD8-TL epitopes is comparable to the positive selection observed for the variable loops of env. We also found that >60% of viral variation outside of the viral envelope occurs within recognized CD8-TL epitopes. Therefore, we conclude that CD8-TL selection is the dominant cause of SIV diversification outside of the envelope.

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