(PQC4) Habitats in Prostate Cancer

Project: Research project

Description

DESCRIPTION (provided by applicant): This proposal will address PQC-4: What in vivo imaging methods can be developed to portray the cytotype of a tumor defined as the identity, quantity, and location of each of the different cell types that make up a tumor and its microenvironment? An ideal system to address this question will have the following characteristics: 1) images and data should be obtained from human patients; 2) the relationship between imaging and cytotypes should have clinical relevance; 3) there should be a large amount and a balance in data obtained from within cancerous and non-cancerous volumes; 4) the image data should be of high quality and ideally multiparametric; and 5) registration of histology to radiographic images must be feasible. Such criteria are met in prostate cancer patients who are being monitored by active surveillance (AS). The University of Miami (UM) has a large AS population, and patients with prostate cancer are regularly and routinely imaged with multiparametric MRI (MP- MRI) that includes diffusion (DWI), dynamic contrast enhancement (DCE) and T2 weighted (T2w) imaging sequences as standard of care (SOC). These images are fused to a transrectal ultrasound (TRUS) guidance instrument for biopsy localization. The singular goal of the current work is to develop predictive models that define this interrelationshi based on profound image analyses (radiomics) in combination with quantitative histology and immunohistochemistry from spatially co-registered volumes; thus defining the cytotypes giving rise to MR image data. Researchers at the Moffitt Cancer Center have pioneered the application of radiomics and predictive (classifier like) modeling to cancer. Thus, this work will proceed with two interrelated aims. In Aim 1, MR images, histology, gene expression and clinical data will be generated at UM via the MAST Trial: MRI- Guided Biopsy Selection for Active Surveillance versus Treatment. In Aim 2, informatics data analysis, databasing and classifier modeling will be undertaken at Moffitt. Analysis of MR images will use a radiomics approach, wherein 432 size, shape and texture features are extracted from image-identified habitats. These will be matched up to registered histology images analyzed with quantitative pathology wherein 32 features are extracted from each cell to form clusters of similar morphotypes, as well as IHC for known and putative progression markers. From these quantitative markers, training and test set classifier models will be developed to relate the MR-defined habitats to their underlying mixtures of cytotypes. Because this will be a large and invaluable data base, it is our explicit intention to share the complete dataset, with the research community through material transfer agreements, which will allow alternative data mining schema.
StatusFinished
Effective start/end date9/19/148/31/19

Funding

  • National Institutes of Health: $692,000.00
  • National Institutes of Health: $682,812.00
  • National Institutes of Health: $730,977.00
  • National Institutes of Health: $681,586.00

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Ecosystem
Prostatic Neoplasms
Histology
Transfer Agreement
Population Surveillance
Biopsy
Neoplasms
Informatics
Diffusion Magnetic Resonance Imaging
Tumor Microenvironment
Data Mining
Standard of Care
Immunohistochemistry
Research Personnel
Databases
Pathology
Gene Expression
Research
Therapeutics

ASJC

  • Medicine(all)