Research Output 1969 2019

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2019

Adding Authenticity to Inquiry in a First-Year, Research-Based, Biology Laboratory Course

Indorf, J. L., Weremijewicz, J., Janos, D. P. & Gaines, M., Sep 1 2019, In : CBE life sciences education. 18, 3, ar38.

Research output: Contribution to journalArticle

Open Access
authenticity
biology
Students
Research
Research laboratories

Amphibian responses to livestock use of wetlands: new empirical data and a global review

Howell, H. J., Mothes, C. C., Clements, S. L., Catania, S. V., Rothermel, B. B. & Searcy, C., Jan 1 2019, (Accepted/In press) In : Ecological Applications. e01976.

Research output: Contribution to journalArticle

amphibian
livestock
wetland
literature review
cattle

Assessing changes in genomic divergence following a century of human-mediated secondary contact among wild and captive-bred ducks

Lavretsky, P., McInerney, N. R., Mohl, J. E., Brown, J. I., James, H. F., McCracken, K. G. & Fleischer, R. C., Jan 1 2019, (Accepted/In press) In : Molecular ecology.

Research output: Contribution to journalArticle

duck breeds
secondary contact
Ducks
Anas platyrhynchos
genomics
1 Citation (Scopus)

Botanic gardens are an untapped resource for studying the functional ecology of tropical plants

Perez, T. M., Valverde-Barrantes, O., Bravo, C., Taylor, T. C., Fadrique, B., Hogan, J. A., Pardo, C. J., Stroud, J. T., Baraloto, C. & Feeley, K., Jan 7 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1763, 20170390.

Research output: Contribution to journalArticle

botanical gardens
Ecology
ecology
Biodiversity
Climate change
5 Citations (Scopus)

Carbon Nitride Dots: A Selective Bioimaging Nanomaterial

Liyanage, P. Y., Graham, R. M., Pandey, R. R., Chusuei, C. C., Mintz, K. J., Zhou, Y., Harper, J. K., Wu, W., Wikramanayake, A. H., Vanni, S. & Leblanc, R. M., Jan 16 2019, In : Bioconjugate Chemistry. 30, 1, p. 111-123 13 p.

Research output: Contribution to journalArticle

Quantum Dots
Carbon nitride
Nanostructures
Nanostructured materials
Semiconductor quantum dots
2 Citations (Scopus)
Structured Populations
Carrying Capacity
Conservation of Natural Resources
carrying capacity
Patch

Climate, rather than human disturbance, is the main driver of age-specific mortality trajectories in a tropical tree

Gaoue, O. G., Horvitz, C. C., Steiner, U. K. & Tuljapurkar, S., May 24 2019, In : Ecological Modelling. 400, p. 34-40 7 p.

Research output: Contribution to journalArticle

trajectory
disturbance
mortality
climate
demography

Constraints on song type matching in a songbird

Searcy, W., Ocampo, D. & Nowicki, S., Aug 1 2019, In : Behavioral Ecology and Sociobiology. 73, 8, 102.

Research output: Contribution to journalArticle

songbird
songbirds
song
animal communication
Passeriformes
2 Citations (Scopus)

Control of breathing and respiratory gas exchange in high-altitude ducks native to the Andes

Ivy, C. M., Lague, S. L., York, J. M., Chua, B. A., Alza, L., Cheek, R., Dawson, N. J., Frappell, P. B., McCracken, K., Milsom, W. K. & Scott, G. R., Apr 1 2019, In : The Journal of experimental biology. 222

Research output: Contribution to journalArticle

Open Access
pulmonary gas exchange
respiratory gases
Ducks
gas exchange
ducks
2 Citations (Scopus)

Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-altitude ducks

Graham, A. M. & McCracken, K., Jan 1 2019, (Accepted/In press) In : Heredity.

Research output: Contribution to journalArticle

Ducks
Exons
Genes
South America
Transcriptional Activation
2 Citations (Scopus)

Convergent melanism in populations of a Solomon Island flycatcher is mediated by unique genetic mechanisms

Uy, J. A., Cooper, E. A. & Chaves, J. A., Jan 1 2019, In : Emu.

Research output: Contribution to journalArticle

melanism
Solomon Islands
alpha-melanocyte-stimulating hormone
mutation
color
2 Citations (Scopus)

ddRAD-seq data reveal significant genome-wide population structure and divergent genomic regions that distinguish the mallard and close relatives in North America

Lavretsky, P., DaCosta, J. M., Sorenson, M. D., McCracken, K. & Peters, J. L., Jan 1 2019, In : Molecular ecology.

Research output: Contribution to journalArticle

Gene Flow
Anas platyrhynchos
North America
population structure
gene flow

Distinct transcriptional regulation of Nanos2 in the germ line and soma by the Wnt and delta/notch pathways

Oulhen, N., Swartz, S. Z., Wang, L., Wikramanayake, A. & Wessel, G. M., Jan 1 2019, In : Developmental Biology.

Research output: Contribution to journalArticle

Carisoprodol
Germ Cells
Gastrulation
Sea Urchins
Wnt Signaling Pathway

Ecological character displacement alters the outcome of priority effects during community assembly

Stroud, J. T., Giery, S. T., Outerbridge, M. & Feeley, K., Jan 1 2019, In : Ecology. e02727.

Research output: Contribution to journalArticle

character displacement
Bermuda
Anolis
contact zone
coexistence
1 Citation (Scopus)

Evaluating ecological niche model accuracy in predicting biotic invasions using South Florida's exotic lizard community

Mothes, C. C., Stroud, J. T., Clements, S. L. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : Journal of Biogeography.

Research output: Contribution to journalArticle

lizard
lizards
niches
niche
prediction

Functional composition of epiphyte communities in the Colombian Andes

Agudelo, C. M., Benavides, A. M., Taylor, T., Feeley, K. & Duque, A., Jan 1 2019, (Accepted/In press) In : Ecology. e02858.

Research output: Contribution to journalArticle

epiphyte
leaf area
leaves
epiphytes
blood vessels

Gopher Tortoise Demographic Responses to a Novel Disturbance Regime

Howell, H. J., Rothermel, B. B., White, K. N. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : Journal of Wildlife Management.

Research output: Contribution to journalArticle

Gopherus polyphemus
land cover
ruderal
demographic statistics
land use
1 Citation (Scopus)

Gradual evolution towards flightlessness in steamer ducks

Campagna, L., McCracken, K. & Lovette, I. J., Jan 1 2019, In : Evolution.

Research output: Contribution to journalArticle

flightlessness
steamers
Ducks
ducks
Palaeognathae
1 Citation (Scopus)

How climate affects extreme events and hence ecological population models

Rypkema, D. C., Horvitz, C. C. & Tuljapurkar, S., Jan 1 2019, In : Ecology. e02684.

Research output: Contribution to journalArticle

Open Access
hurricanes
extreme event
hurricane
climate
climate change
4 Citations (Scopus)

Identifying hybrids & the genomics of hybridization: Mallards & American black ducks of Eastern North America

Lavretsky, P., Janzen, T. & McCracken, K., Mar 1 2019, In : Ecology and Evolution. 9, 6, p. 3470-3490 21 p.

Research output: Contribution to journalArticle

Open Access
Anas platyrhynchos
nucleic acid hybridization
genomics
games
loci
2 Citations (Scopus)

Intestinal dysmotility in a zebrafish (Danio rerio) shank3a;shank3b mutant model of autism 06 Biological Sciences 0604 Genetics

James, D. M., Kozol, R. A., Kajiwara, Y., Wahl, A. L., Storrs, E. C., Buxbaum, J. D., Klein, M., Moshiree, B. & Dallman, J., Jan 31 2019, In : Molecular Autism. 10, 1, 3.

Research output: Contribution to journalArticle

Biological Science Disciplines
Zebrafish
Autistic Disorder
Gastrointestinal Tract
Enteroendocrine Cells

Molecular and morphological differentiation among Torrent Duck (Merganetta armata) populations in the Andes

Gutiérrez-Pinto, N., McCracken, K., Tubaro, P., Kopuchian, C., Astie, A. & Cadena, C. D., Sep 1 2019, In : Zoologica Scripta. 48, 5, p. 589-604 16 p.

Research output: Contribution to journalArticle

Arma
torrent
Ducks
ducks
Birds
1 Citation (Scopus)

Muddy boots beget wisdom: Implications for rare or endangered plant species distribution models

Oleas, N. H., Feeley, K., Fajardo, J., Meerow, A. W., Gebelein, J. & Francisco-Ortega, J., Jan 1 2019, In : Diversity. 11, 1, 10.

Research output: Contribution to journalArticle

Open Access
Biological Extinction
Plant Dispersal
Endangered Species
endangered species
Ecosystem
1 Citation (Scopus)
reptile
native species
amphibian
reptiles
habitat

Performance on tests of cognitive ability is not repeatable across years in a songbird

Soha, J. A., Peters, S., Anderson, R. C., Searcy, W. A. & Nowicki, S., Jan 1 2019, (Accepted/In press) In : Animal Behaviour.

Research output: Contribution to journalArticle

songbird
songbirds
testing
song
repeatability
1 Citation (Scopus)

Rapid, complete reproductive isolation in two closely related Zosterops White-eye bird species despite broadly overlapping ranges*

Cowles, S. A. & Uy, J. A., Jan 1 2019, In : Evolution. 73, 8, p. 1647-1662 16 p.

Research output: Contribution to journalArticle

Reproductive Isolation
secondary contact
reproductive isolation
Birds
eyes

Rarity of monodominance in hyperdiverse Amazonian forests

ter Steege, H., Henkel, T. W., Helal, N., Marimon, B. S., Marimon-Junior, B. H., Huth, A., Groeneveld, J., Sabatier, D., Coelho, L. D. S., Filho, D. D. A. L., Salomão, R. P., Amaral, I. L., Matos, F. D. D. A., Castilho, C. V., Phillips, O. L., Guevara, J. E., Carim, M. D. J. V., Cárdenas López, D., Magnusson, W. E., Wittmann, F. & 191 others, Irume, M. V., Martins, M. P., Guimarães, J. R. D. S., Molino, J. F., Bánki, O. S., Piedade, M. T. F., Pitman, N. C. A., Mendoza, A. M., Ramos, J. F., Luize, B. G., Moraes de Leão Novo, E. M., Núñez Vargas, P., Silva, T. S. F., Venticinque, E. M., Manzatto, A. G., Reis, N. F. C., Terborgh, J., Casula, K. R., Honorio Coronado, E. N., Montero, J. C., Feldpausch, T. R., Duque, A., Costa, F. R. C., Arboleda, N. C., Schöngart, J., Killeen, T. J., Vasquez, R., Mostacedo, B., Demarchi, L. O., Assis, R. L., Baraloto, C., Engel, J., Petronelli, P., Castellanos, H., de Medeiros, M. B., Quaresma, A., Simon, M. F., Andrade, A., Camargo, J. L., Laurance, S. G. W., Laurance, W. F., Rincón, L. M., Schietti, J., Sousa, T. R., de Sousa Farias, E., Lopes, M. A., Magalhães, J. L. L., Mendonça Nascimento, H. E., Lima de Queiroz, H., Aymard C, G. A., Brienen, R., Revilla, J. D. C., Vieira, I. C. G., Cintra, B. B. L., Stevenson, P. R., Feitosa, Y. O., Duivenvoorden, J. F., Mogollón, H. F., Araujo-Murakami, A., Ferreira, L. V., Lozada, J. R., Comiskey, J. A., de Toledo, J. J., Damasco, G., Dávila, N., Draper, F., García-Villacorta, R., Lopes, A., Vicentini, A., Alonso, A., Dallmeier, F., Gomes, V. H. F., Lloyd, J., Neill, D., de Aguiar, D. P. P., Arroyo, L., Carvalho, F. A., de Souza, F. C., do Amaral, D. D., Feeley, K. J., Gribel, R., Pansonato, M. P., Barlow, J., Berenguer, E., Ferreira, J., Fine, P. V. A., Guedes, M. C., Jimenez, E. M., Licona, J. C., Peñuela Mora, M. C., Villa, B., Cerón, C., Maas, P., Silveira, M., Stropp, J., Thomas, R., Baker, T. R., Daly, D., Dexter, K. G., Huamantupa-Chuquimaco, I., Milliken, W., Pennington, T., Ríos Paredes, M., Fuentes, A., Klitgaard, B., Pena, J. L. M., Peres, C. A., Silman, M. R., Tello, J. S., Chave, J., Cornejo Valverde, F., Di Fiore, A., Hilário, R. R., Phillips, J. F., Rivas-Torres, G., van Andel, T. R., von Hildebrand, P., Noronha, J. C., Barbosa, E. M., Barbosa, F. R., de Matos Bonates, L. C., Carpanedo, R. D. S., Dávila Doza, H. P., Fonty, É., GómeZárate z, R., Gonzales, T., Gallardo Gonzales, G. P., Hoffman, B., Junqueira, A. B., Malhi, Y., Miranda, I. P. D. A., Pinto, L. F. M., Prieto, A., Rodrigues, D. D. J., Rudas, A., Ruschel, A. R., Silva, N., Vela, C. I. A., Vos, V. A., Zent, E. L., Zent, S., Weiss Albuquerque, B., Cano, A., Carrero Márquez, Y. A., Correa, D. F., Costa, J. B. P., Flores, B. M., Galbraith, D., Holmgren, M., Kalamandeen, M., Nascimento, M. T., Oliveira, A. A., Ramirez-Angulo, H., Rocha, M., Scudeller, V. V., Sierra, R., Tirado, M., Umaña Medina, M. N., van der Heijden, G., Vilanova Torre, E., Vriesendorp, C., Wang, O., Young, K. R., Ahuite Reategui, M. A., Baider, C., Balslev, H., Cárdenas, S., Casas, L. F., Farfan-Rios, W., Ferreira, C., Linares-Palomino, R., Mendoza, C., Mesones, I., Torres-Lezama, A., Giraldo, L. E. U., Villarroel, D., Zagt, R., Alexiades, M. N., de Oliveira, E. A., Garcia-Cabrera, K., Hernandez, L., Palacios Cuenca, W., Pansini, S., Pauletto, D., Ramirez Arevalo, F., Sampaio, A. F., Sandoval, E. H. V., Valenzuela Gamarra, L., Levesley, A., Pickavance, G. & Melgaço, K., Dec 1 2019, In : Scientific reports. 9, 1, 13822.

Research output: Contribution to journalArticle

Open Access
Rhizobium
Seeds
Forests
Databases
Equipment and Supplies
8 Citations (Scopus)

Ratiometric temperature sensing with fluorescent thermochromic switches

Mazza, M. M. A., Cardano, F., Cusido, J., Baker, J., Giordani, S. & Raymo, F., Jan 1 2019, In : Chemical Communications. 55, 8, p. 1112-1115 4 p.

Research output: Contribution to journalArticle

Switches
Molecular Probes
Chromophores
Visualization
Fluorescence
4 Citations (Scopus)

Remote sensing of unhelpful resilience to sea level rise caused by mangrove expansion: A case study of islands in Florida Bay, USA

Zhai, L., Zhang, B., Roy, S. S., Fuller, D. & Sternberg, L., Feb 1 2019, In : Ecological Indicators. 97, p. 51-58 8 p.

Research output: Contribution to journalArticle

mangrove
sea level
remote sensing
case studies
sea level rise

Serotonin and neuropeptides are both released by the HSN command neuron to initiate C. elegans egg laying

Brewer, J. C., Olson, A. C., Collins, K. & Koelle, M. R., Jan 1 2019, In : PLoS Genetics. 15, 1, e1007896.

Research output: Contribution to journalArticle

Open Access
hermaphrodite
neuropeptides
Neuropeptides
serotonin
Ovum
2 Citations (Scopus)

Soil microbiomes underlie population persistence of an endangered plant species

David, A. S., Quintana-Ascencio, P. F., Menges, E. S., Thapa-Magar, K. B., Afkhami, M. E. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : American Naturalist.

Research output: Contribution to journalArticle

endangered species
persistence
population growth
soil
population dynamics
1 Citation (Scopus)

Still Enigmatic: Innate Immunity in the Ctenophore Mnemiopsis leidyi

Traylor-Knowles, N., Vandepas, L. E. & Browne, W. E., Oct 1 2019, In : Integrative and comparative biology. 59, 4, p. 811-818 8 p.

Research output: Contribution to journalArticle

Mnemiopsis leidyi
Ctenophora
invertebrates
innate immunity
pathogens

Synthesis and characterization of ultrafiltration membranes by phase inversion and by uropathogenic Escherichia coli retention performance

Ounifi, I., Saidi, N., Kahloul, M., Sealey, K. S., Hafiane, A. & Ferjani, E., Sep 2019, In : Desalination and Water Treatment. 163, p. 109-117 9 p.

Research output: Contribution to journalArticle

Ultrafiltration
ultrafiltration
Escherichia coli
membrane
Membranes
3 Citations (Scopus)

The capacity to emit isoprene differentiates the photosynthetic temperature responses of tropical plant species

Taylor, T. C., Smith, M. N., Slot, M. & Feeley, K., Jan 1 2019, In : Plant Cell and Environment.

Research output: Contribution to journalArticle

Temperature
temperature
Global Warming
Hot Temperature
Photosynthesis

The green peach aphid gut contains host plant microRNAs identified by comprehensive annotation of Brassica oleracea small RNA data

Thompson, M. C., Feng, H., Wuchty, S. & Wilson, A. C. C., Dec 1 2019, In : Scientific reports. 9, 1, 18904.

Research output: Contribution to journalArticle

Open Access
Aphids
Brassica
MicroRNAs
RNA
Buchnera

The influence of historical dispersal on the phylogenetic structure of tree communities in the tropical Andes

Ramírez, S., González-Caro, S., Phillips, J., Cabrera, E., Feeley, K. & Duque, Á., Jan 1 2019, In : Biotropica.

Research output: Contribution to journalArticle

phylogenetics
relatedness
phylogeny
tropics
species diversity

Transcriptomic Analyses of Inner Ear Sensory Epithelia in Zebrafish

Yao, Q., Wang, L., Mittal, R., Yan, D., Richmond, M. T., Denyer, S., Requena, T., Liu, K., Varshney, G. K., Lu, Z. & Liu, X., Jan 1 2019, (Accepted/In press) In : Anatomical Record.

Research output: Contribution to journalArticle

Otolithic Membrane
hearing
Zebrafish
Inner Ear
otolith
7 Citations (Scopus)

Tryptophan carbon dots and their ability to cross the blood-brain barrier

Mintz, K. J., Mercado, G., Zhou, Y., Ji, Y., Hettiarachchi, S. D., Liyanage, P. Y., Pandey, R. R., Chusuei, C. C., Dallman, J. & Leblanc, R., Apr 1 2019, In : Colloids and Surfaces B: Biointerfaces. 176, p. 488-493 6 p.

Research output: Contribution to journalArticle

blood-brain barrier
Aptitude
tryptophan
Blood-Brain Barrier
Tryptophan
2 Citations (Scopus)

Zebrafish Model for Nonsyndromic X-Linked Sensorineural Deafness, DFNX1

DeSmidt, A. A., Zou, B., Grati, M., Yan, D., Mittal, R., Yao, Q., Richmond, M. T., Denyer, S., Liu, X. Z. & Lu, Z., Jan 1 2019, In : Anatomical Record.

Research output: Contribution to journalArticle

deafness
Ribose-Phosphate Pyrophosphokinase
Deafness
Zebrafish
Danio rerio

Филогеографическая структура евразийской свиязи (Mareca penelope) в Голарктике

Translated title of the contribution: Holarctic phylogeographic structure of Eurasian wigeon (Mareca penelope)Kulikova, I. V., Zhuravlev, Y. N., Korobitsyn, I. G., Nemkova, G. A., McCracken, K. & Peters, J. L., Jan 1 2019, In : Vavilovskii Zhurnal Genetiki i Selektsii. 23, 3, p. 362-369 8 p.

Research output: Contribution to journalArticle

Open Access
Coastal zones
Ducks
Mitochondrial DNA
Population
North America
2018
7 Citations (Scopus)

A Photoactivatable Far-Red/Near-Infrared BODIPY to Monitor Cellular Dynamics in Vivo

Sansalone, L., Tang, S., Garcia-Amorós, J., Zhang, Y., Nonell, S., Baker, J., Captain, B. & Raymo, F., Mar 28 2018, (Accepted/In press) In : ACS Sensors.

Research output: Contribution to journalArticle

Oxazines
Fluorescence
embryos
Infrared radiation
fluorescence

A test of the eavesdropping avoidance hypothesis as an explanation for the structure of low-amplitude aggressive signals in the song sparrow

Niederhauser, J. M., DuBois, A. L., Searcy, W., Nowicki, S. & Anderson, R. C., Mar 1 2018, In : Behavioral Ecology and Sociobiology. 72, 3, 47.

Research output: Contribution to journalArticle

Passeriformes
song
animal communication
testing
test
1 Citation (Scopus)

Āwhina Revolution: A Bayesian Analysis of Undergraduate and Postgraduate Completion Rates from a Program for Māori and Pacific Success in STEM Disciplines

Richardson, K., Clark, Z., Gaines, M., Kingi, H., Miller, S., Pearson, W. & Richardson, L., Mar 1 2018, In : CBE life sciences education. 17, 1

Research output: Contribution to journalArticle

Open Access
Morus
Bayes Theorem
Mathematics
mathematics
Students
1 Citation (Scopus)

Balancing tradeoffs: Reconciling multiple environmental goals when ecosystem services vary regionally

O'Connell, C. S., Carlson, K. M., Cuadra, S., Feeley, K., Gerber, J., West, P. C. & Polasky, S., Jun 1 2018, In : Environmental Research Letters. 13, 6, 064008.

Research output: Contribution to journalArticle

ecosystem service
Ecosystems
Ecosystem
Biodiversity
Agriculture
4 Citations (Scopus)

Cooperation and coexpression: How coexpression networks shift in response to multiple mutualists

Palakurty, S. X., Stinchcombe, J. R. & Afkhami, M., Apr 1 2018, In : Molecular Ecology. 27, 8, p. 1860-1873 14 p.

Research output: Contribution to journalArticle

Gene Regulatory Networks
Plant Genes
Rhizobium
Symbiosis
gene
1 Citation (Scopus)

down feather structure varies between low‐ and high‐altitude torrent ducks (Merganetta armata) in the Andes

Cheek, R. G., Alza, L. & McCracken, K., Jan 1 2018, In : Ornitologia Neotropical. 29, p. 27-35 9 p.

Research output: Contribution to journalArticle

down (feathers)
Arma
torrent
feather
feathers
4 Citations (Scopus)

Early development of vocal interaction rules in a duetting songbird

Rivera-Cáceres, K. D., Quirós-Guerrero, E., Araya-Salas, M., Templeton, C. N. & Searcy, W., Feb 1 2018, In : Royal Society Open Science. 5, 2, 171791.

Research output: Contribution to journalArticle

Songbirds
Music
Birds
Animal Communication
Singing
2 Citations (Scopus)

Effects of endogenous and exogenous processes on aboveground biomass stocks and dynamics in Andean forests

Peña, M. A., Feeley, K. & Duque, A., Dec 1 2018, In : Plant Ecology. 219, 12, p. 1481-1492 12 p.

Research output: Contribution to journalArticle

aboveground biomass
mortality
productivity
tropical forests
tropical forest
3 Citations (Scopus)

Extreme drought favors potential mixotrophic organisms in tropical semi-arid reservoirs

Costa, M. R. A., Menezes, R. F., Sarmento, H., Attayde, J. L., Sternberg, L. & Becker, V., Mar 16 2018, (Accepted/In press) In : Hydrobiologia. p. 1-12 12 p.

Research output: Contribution to journalArticle

algae
drought
organisms
surface water level
Cyanobacteria
17 Citations (Scopus)

Global climate change increases risk of crop yield losses and food insecurity in the tropical Andes

Tito, R., Vasconcelos, H. L. & Feeley, K., Feb 1 2018, In : Global Change Biology. 24, 2, p. e592-e602

Research output: Contribution to journalArticle

Climate change
crop yield
Crops
global climate
climate change