Research Output

2020

A morphometric analysis of the lungs of high-altitude ducks and geese

Bakkeren, C., Smith, E., York, J. M., Chua, B., McCracken, K. G. & Milsom, W. K., Jan 1 2020, (Accepted/In press) In : Journal of Anatomy.

Research output: Contribution to journalArticle

Cardiovascular responses to progressive hypoxia in ducks native to high altitude in the Andes

Laguë, S. L., Ivy, C. M., York, J. M., Chua, B. A., Alza, L., Cheek, R., Dawson, N. J., Frappell, P. B., Farrell, A. P., McCracken, K. G., Scott, G. R. & Milsom, W. K., Jan 1 2020, In : Journal of Experimental Biology. 223, 4, jeb211250.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats

Song, S. J., Sanders, J. G., Delsuc, F., Metcalf, J., Amato, K., Taylor, M. W., Mazel, F., Lutz, H. L., Winker, K., Graves, G. R., Humphrey, G., Gilbert, J. A., Hackett, S. J., White, K. P., Skeen, H. R., Kurtis, S. M., Withrow, J., Braile, T., Miller, M., McCracken, K. G. & 6 others, Maley, J. M., Ezenwa, V. O., Williams, A., Blanton, J. M., McKenzie, V. J. & Knight, R., Jan 1 2020, In : mBio. 11, 1, e02901-19.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Fungal functional ecology: bringing a trait-based approach to plant-associated fungi

Zanne, A. E., Abarenkov, K., Afkhami, M. E., Aguilar-Trigueros, C. A., Bates, S., Bhatnagar, J. M., Busby, P. E., Christian, N., Cornwell, W. K., Crowther, T. W., Flores-Moreno, H., Floudas, D., Gazis, R., Hibbett, D., Kennedy, P., Lindner, D. L., Maynard, D. S., Milo, A. M., Nilsson, R. H., Powell, J. & 3 others, Schildhauer, M., Schilling, J. & Treseder, K. K., Apr 1 2020, In : Biological Reviews. 95, 2, p. 409-433 25 p.

Research output: Contribution to journalArticle

Gaps present a trade-off between dispersal and establishment that nourishes species diversity

Terborgh, J., Huanca Nuñez, N., Feeley, K. & Beck, H., Jan 1 2020, (Accepted/In press) In : Ecology.

Research output: Contribution to journalArticle

Identification of toxicity effects of Cu2O materials on: C. elegans as a function of environmental ionic composition

Munro, C. J., Nguyen, M. A., Falgons, C., Chaudhry, S., Olagunju, M. O., Bode, A., Bobé, C., Portela, M. E., Knecht, M. R. & Collins, K. M., Feb 2020, In : Environmental Science: Nano. 7, 2, p. 645-655 11 p.

Research output: Contribution to journalArticle

Skewed distributions of lifetime reproductive success: beyond mean and variance

Tuljapurkar, S., Zuo, W., Coulson, T., Horvitz, C. & Gaillard, J. M., Apr 1 2020, In : Ecology Letters. 23, 4, p. 748-756 9 p.

Research output: Contribution to journalArticle

The Generation of Zebrafish Mariner Model Using the CRISPR/Cas9 System

Zou, B., Desmidt, A. A., Mittal, R., Yan, D., Richmond, M., Tekin, M., Liu, X. Z. & Lu, Z., Mar 1 2020, In : Anatomical Record. 303, 3, p. 556-562 7 p.

Research output: Contribution to journalArticle

1 Scopus citations

Transcriptomic Analyses of Inner Ear Sensory Epithelia in Zebrafish

Yao, Q., Wang, L., Mittal, R., Yan, D., Richmond, M. T., Denyer, S., Requena, T., Liu, K., Varshney, G. K., Lu, Z. & Liu, X. Z., Mar 1 2020, In : Anatomical Record. 303, 3, p. 527-543 17 p.

Research output: Contribution to journalArticle

Zebrafish Model for Nonsyndromic X-Linked Sensorineural Deafness, DFNX1

DeSmidt, A. A., Zou, B., Grati, M., Yan, D., Mittal, R., Yao, Q., Richmond, M. T., Denyer, S., Liu, X. Z. & Lu, Z., Mar 1 2020, In : Anatomical Record. 303, 3, p. 544-555 12 p.

Research output: Contribution to journalArticle

4 Scopus citations
2019

Adding Authenticity to Inquiry in a First-Year, Research-Based, Biology Laboratory Course

Indorf, J. L., Weremijewicz, J., Janos, D. P. & Gaines, M., Sep 1 2019, In : CBE life sciences education. 18, 3, ar38.

Research output: Contribution to journalArticle

Open Access

Amphibian responses to livestock use of wetlands: new empirical data and a global review

Howell, H. J., Mothes, C. C., Clements, S. L., Catania, S. V., Rothermel, B. B. & Searcy, C., Jan 1 2019, (Accepted/In press) In : Ecological Applications. e01976.

Research output: Contribution to journalArticle

1 Scopus citations

Animal communication, cognition, and the evolution of language

Searcy, W. A., Jan 1 2019, In : Animal Behaviour.

Research output: Contribution to journalEditorial

Assessing changes in genomic divergence following a century of human-mediated secondary contact among wild and captive-bred ducks

Lavretsky, P., McInerney, N. R., Mohl, J. E., Brown, J. I., James, H. F., McCracken, K. G. & Fleischer, R. C., Jan 1 2019, (Accepted/In press) In : Molecular ecology.

Research output: Contribution to journalArticle

Birdsong learning, avian cognition and the evolution of language

Searcy, W. A. & Nowicki, S., Jan 1 2019, In : Animal Behaviour.

Research output: Contribution to journalReview article

4 Scopus citations

Botanic gardens are an untapped resource for studying the functional ecology of tropical plants

Perez, T. M., Valverde-Barrantes, O., Bravo, C., Taylor, T. C., Fadrique, B., Hogan, J. A., Pardo, C. J., Stroud, J. T., Baraloto, C. & Feeley, K., Jan 7 2019, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 374, 1763, 20170390.

Research output: Contribution to journalArticle

2 Scopus citations

Carbon Nitride Dots: A Selective Bioimaging Nanomaterial

Liyanage, P. Y., Graham, R. M., Pandey, R. R., Chusuei, C. C., Mintz, K. J., Zhou, Y., Harper, J. K., Wu, W., Wikramanayake, A. H., Vanni, S. & Leblanc, R. M., Jan 16 2019, In : Bioconjugate Chemistry. 30, 1, p. 111-123 13 p.

Research output: Contribution to journalArticle

10 Scopus citations
2 Scopus citations

Climate, rather than human disturbance, is the main driver of age-specific mortality trajectories in a tropical tree

Gaoue, O. G., Horvitz, C. C., Steiner, U. K. & Tuljapurkar, S., May 24 2019, In : Ecological Modelling. 400, p. 34-40 7 p.

Research output: Contribution to journalArticle

Constraints on song type matching in a songbird

Searcy, W., Ocampo, D. & Nowicki, S., Aug 1 2019, In : Behavioral Ecology and Sociobiology. 73, 8, 102.

Research output: Contribution to journalArticle

Control of breathing and respiratory gas exchange in high-altitude ducks native to the Andes

Ivy, C. M., Lague, S. L., York, J. M., Chua, B. A., Alza, L., Cheek, R., Dawson, N. J., Frappell, P. B., McCracken, K. G., Milsom, W. K. & Scott, G. R., Jan 1 2019, In : Journal of Experimental Biology. 222, 7, jeb198622.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Convergent evolution on the hypoxia-inducible factor (HIF) pathway genes EGLN1 and EPAS1 in high-altitude ducks

Graham, A. M. & McCracken, K. G., Jun 1 2019, In : Heredity. 122, 6, p. 819-832 14 p.

Research output: Contribution to journalArticle

2 Scopus citations

Convergent melanism in populations of a Solomon Island flycatcher is mediated by unique genetic mechanisms

Uy, J. A., Cooper, E. A. & Chaves, J. A., Jan 1 2019, In : Emu.

Research output: Contribution to journalArticle

2 Scopus citations

Correction to: Widespread but heterogeneous responses of Andean forests to climate change (Nature, (2018), 564, 7735, (207-212), 10.1038/s41586-018-0715-9)

Fadrique, B., Báez, S., Duque, Á., Malizia, A., Blundo, C., Carilla, J., Osinaga-Acosta, O., Malizia, L., Silman, M., Farfán-Ríos, W., Malhi, Y., Young, K. R., Francisco, C. C., Homeier, J., Peralvo, M., Pinto, E., Jadan, O., Aguirre, N., Aguirre, Z. & Feeley, K. J., Jan 31 2019, In : Nature. 565, 7741, p. E10

Research output: Contribution to journalComment/debate

Daytime colour preference in Drosophila depends on the circadian clock and TRP channels

Lazopulo, S., Lazopulo, A., Baker, J. D. & Syed, S., Oct 3 2019, In : Nature. 574, 7776, p. 108-111 4 p.

Research output: Contribution to journalArticle

5 Scopus citations

ddRAD-seq data reveal significant genome-wide population structure and divergent genomic regions that distinguish the mallard and close relatives in North America

Lavretsky, P., DaCosta, J. M., Sorenson, M. D., McCracken, K. & Peters, J. L., Jan 1 2019, In : Molecular ecology.

Research output: Contribution to journalArticle

4 Scopus citations

Distinct transcriptional regulation of Nanos2 in the germ line and soma by the Wnt and delta/notch pathways

Oulhen, N., Swartz, S. Z., Wang, L., Wikramanayake, A. & Wessel, G. M., Jan 1 2019, In : Developmental Biology.

Research output: Contribution to journalArticle

Ecological character displacement alters the outcome of priority effects during community assembly

Stroud, J. T., Giery, S. T., Outerbridge, M. & Feeley, K., Jan 1 2019, In : Ecology. e02727.

Research output: Contribution to journalArticle

1 Scopus citations

Evaluating ecological niche model accuracy in predicting biotic invasions using South Florida's exotic lizard community

Mothes, C. C., Stroud, J. T., Clements, S. L. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : Journal of Biogeography.

Research output: Contribution to journalArticle

2 Scopus citations

Functional composition of epiphyte communities in the Colombian Andes

Agudelo, C. M., Benavides, A. M., Taylor, T., Feeley, K. & Duque, A., Jan 1 2019, (Accepted/In press) In : Ecology. e02858.

Research output: Contribution to journalArticle

Gopher Tortoise Demographic Responses to a Novel Disturbance Regime

Howell, H. J., Rothermel, B. B., White, K. N. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : Journal of Wildlife Management.

Research output: Contribution to journalArticle

1 Scopus citations

Gradual evolution towards flightlessness in steamer ducks

Campagna, L., McCracken, K. & Lovette, I. J., Jan 1 2019, In : Evolution.

Research output: Contribution to journalArticle

3 Scopus citations

How climate affects extreme events and hence ecological population models

Rypkema, D. C., Horvitz, C. C. & Tuljapurkar, S., Jan 1 2019, In : Ecology. e02684.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Identifying hybrids & the genomics of hybridization: Mallards & American black ducks of Eastern North America

Lavretsky, P., Janzen, T. & McCracken, K., Mar 1 2019, In : Ecology and Evolution. 9, 6, p. 3470-3490 21 p.

Research output: Contribution to journalArticle

Open Access
5 Scopus citations

Intestinal dysmotility in a zebrafish (Danio rerio) shank3a;shank3b mutant model of autism

James, D. M., Kozol, R. A., Kajiwara, Y., Wahl, A. L., Storrs, E. C., Buxbaum, J. D., Klein, M., Moshiree, B. & Dallman, J. E., Jan 31 2019, In : Molecular Autism. 10, 1, 3.

Research output: Contribution to journalArticle

2 Scopus citations

Molecular and morphological differentiation among Torrent Duck (Merganetta armata) populations in the Andes

Gutiérrez-Pinto, N., McCracken, K., Tubaro, P., Kopuchian, C., Astie, A. & Cadena, C. D., Sep 1 2019, In : Zoologica Scripta. 48, 5, p. 589-604 16 p.

Research output: Contribution to journalArticle

Muddy boots beget wisdom: Implications for rare or endangered plant species distribution models

Oleas, N. H., Feeley, K., Fajardo, J., Meerow, A. W., Gebelein, J. & Francisco-Ortega, J., Jan 1 2019, In : Diversity. 11, 1, 10.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations
1 Scopus citations

Old divergence and restricted gene flow between torrent duck (Merganetta armata) subspecies in the Central and Southern Andes

Alza, L., Lavretsky, P., Peters, J. L., Cerón, G., Smith, M., Kopuchian, C., Astie, A. & McCracken, K. G., Jan 1 2019, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Open Access

Open access solutions for biodiversity journals: Do not replace one problem with another

Peterson, A. T., Anderson, R. P., Beger, M., Bolliger, J., Brotons, L., Burridge, C. P., Cobos, M. E., Cuervo-Robayo, A. P., Di Minin, E., Diez, J., Elith, J., Embling, C. B., Escobar, L. E., Essl, F., Feeley, K. J., Hawkes, L., Jiménez-García, D., Jimenez, L., Green, D. M., Knop, E. & 35 others, Kühn, I., Lahoz-Monfort, J. J., Lira-Noriega, A., Lobo, J. M., Loyola, R., Mac Nally, R., Machado-Stredel, F., Martínez-Meyer, E., McCarthy, M., Merow, C., Nori, J., Nuñez-Penichet, C., Osorio-Olvera, L., Pyšek, P., Rejmánek, M., Ricciardi, A., Robertson, M., Rojas Soto, O., Romero-Alvarez, D., Roura-Pascual, N., Santini, L., Schoeman, D. S., Schröder, B., Soberon, J., Strubbe, D., Thuiller, W., Traveset, A., Treml, E. A., Václavík, T., Varela, S., Watson, J. E. M., Wiersma, Y., Wintle, B., Yanez-Arenas, C. & Zurell, D., Jan 2019, In : Diversity and Distributions. 25, 1, p. 5-8 4 p.

Research output: Contribution to journalLetter

8 Scopus citations

Performance on tests of cognitive ability is not repeatable across years in a songbird

Soha, J. A., Peters, S., Anderson, R. C., Searcy, W. A. & Nowicki, S., Jan 1 2019, (Accepted/In press) In : Animal Behaviour.

Research output: Contribution to journalArticle

Rapid, complete reproductive isolation in two closely related Zosterops White-eye bird species despite broadly overlapping ranges*

Cowles, S. A. & Uy, J. A., Jan 1 2019, In : Evolution. 73, 8, p. 1647-1662 16 p.

Research output: Contribution to journalArticle

2 Scopus citations

Rarity of monodominance in hyperdiverse Amazonian forests

ter Steege, H., Henkel, T. W., Helal, N., Marimon, B. S., Marimon-Junior, B. H., Huth, A., Groeneveld, J., Sabatier, D., Coelho, L. D. S., Filho, D. D. A. L., Salomão, R. P., Amaral, I. L., Matos, F. D. D. A., Castilho, C. V., Phillips, O. L., Guevara, J. E., Carim, M. D. J. V., Cárdenas López, D., Magnusson, W. E., Wittmann, F. & 191 others, Irume, M. V., Martins, M. P., Guimarães, J. R. D. S., Molino, J. F., Bánki, O. S., Piedade, M. T. F., Pitman, N. C. A., Mendoza, A. M., Ramos, J. F., Luize, B. G., Moraes de Leão Novo, E. M., Núñez Vargas, P., Silva, T. S. F., Venticinque, E. M., Manzatto, A. G., Reis, N. F. C., Terborgh, J., Casula, K. R., Honorio Coronado, E. N., Montero, J. C., Feldpausch, T. R., Duque, A., Costa, F. R. C., Arboleda, N. C., Schöngart, J., Killeen, T. J., Vasquez, R., Mostacedo, B., Demarchi, L. O., Assis, R. L., Baraloto, C., Engel, J., Petronelli, P., Castellanos, H., de Medeiros, M. B., Quaresma, A., Simon, M. F., Andrade, A., Camargo, J. L., Laurance, S. G. W., Laurance, W. F., Rincón, L. M., Schietti, J., Sousa, T. R., de Sousa Farias, E., Lopes, M. A., Magalhães, J. L. L., Mendonça Nascimento, H. E., Lima de Queiroz, H., Aymard C, G. A., Brienen, R., Revilla, J. D. C., Vieira, I. C. G., Cintra, B. B. L., Stevenson, P. R., Feitosa, Y. O., Duivenvoorden, J. F., Mogollón, H. F., Araujo-Murakami, A., Ferreira, L. V., Lozada, J. R., Comiskey, J. A., de Toledo, J. J., Damasco, G., Dávila, N., Draper, F., García-Villacorta, R., Lopes, A., Vicentini, A., Alonso, A., Dallmeier, F., Gomes, V. H. F., Lloyd, J., Neill, D., de Aguiar, D. P. P., Arroyo, L., Carvalho, F. A., de Souza, F. C., do Amaral, D. D., Feeley, K. J., Gribel, R., Pansonato, M. P., Barlow, J., Berenguer, E., Ferreira, J., Fine, P. V. A., Guedes, M. C., Jimenez, E. M., Licona, J. C., Peñuela Mora, M. C., Villa, B., Cerón, C., Maas, P., Silveira, M., Stropp, J., Thomas, R., Baker, T. R., Daly, D., Dexter, K. G., Huamantupa-Chuquimaco, I., Milliken, W., Pennington, T., Ríos Paredes, M., Fuentes, A., Klitgaard, B., Pena, J. L. M., Peres, C. A., Silman, M. R., Tello, J. S., Chave, J., Cornejo Valverde, F., Di Fiore, A., Hilário, R. R., Phillips, J. F., Rivas-Torres, G., van Andel, T. R., von Hildebrand, P., Noronha, J. C., Barbosa, E. M., Barbosa, F. R., de Matos Bonates, L. C., Carpanedo, R. D. S., Dávila Doza, H. P., Fonty, É., GómeZárate z, R., Gonzales, T., Gallardo Gonzales, G. P., Hoffman, B., Junqueira, A. B., Malhi, Y., Miranda, I. P. D. A., Pinto, L. F. M., Prieto, A., Rodrigues, D. D. J., Rudas, A., Ruschel, A. R., Silva, N., Vela, C. I. A., Vos, V. A., Zent, E. L., Zent, S., Weiss Albuquerque, B., Cano, A., Carrero Márquez, Y. A., Correa, D. F., Costa, J. B. P., Flores, B. M., Galbraith, D., Holmgren, M., Kalamandeen, M., Nascimento, M. T., Oliveira, A. A., Ramirez-Angulo, H., Rocha, M., Scudeller, V. V., Sierra, R., Tirado, M., Umaña Medina, M. N., van der Heijden, G., Vilanova Torre, E., Vriesendorp, C., Wang, O., Young, K. R., Ahuite Reategui, M. A., Baider, C., Balslev, H., Cárdenas, S., Casas, L. F., Farfan-Rios, W., Ferreira, C., Linares-Palomino, R., Mendoza, C., Mesones, I., Torres-Lezama, A., Giraldo, L. E. U., Villarroel, D., Zagt, R., Alexiades, M. N., de Oliveira, E. A., Garcia-Cabrera, K., Hernandez, L., Palacios Cuenca, W., Pansini, S., Pauletto, D., Ramirez Arevalo, F., Sampaio, A. F., Sandoval, E. H. V., Valenzuela Gamarra, L., Levesley, A., Pickavance, G. & Melgaço, K., Dec 1 2019, In : Scientific reports. 9, 1, 13822.

Research output: Contribution to journalArticle

Open Access

Ratiometric temperature sensing with fluorescent thermochromic switches

Mazza, M. M. A., Cardano, F., Cusido, J., Baker, J. D., Giordani, S. & Raymo, F. M., Jan 1 2019, In : Chemical Communications. 55, 8, p. 1112-1115 4 p.

Research output: Contribution to journalArticle

9 Scopus citations

Remote sensing of unhelpful resilience to sea level rise caused by mangrove expansion: A case study of islands in Florida Bay, USA

Zhai, L., Zhang, B., Roy, S. S., Fuller, D. O. & da Silveira Lobo Sternberg, L., Feb 2019, In : Ecological Indicators. 97, p. 51-58 8 p.

Research output: Contribution to journalArticle

6 Scopus citations

Serotonin and neuropeptides are both released by the HSN command neuron to initiate C. elegans egg laying

Brewer, J. C., Olson, A. C., Collins, K. & Koelle, M. R., Jan 1 2019, In : PLoS Genetics. 15, 1, e1007896.

Research output: Contribution to journalArticle

Open Access
1 Scopus citations

Soil microbiomes underlie population persistence of an endangered plant species

David, A. S., Quintana-Ascencio, P. F., Menges, E. S., Thapa-Magar, K. B., Afkhami, M. E. & Searcy, C. A., Jan 1 2019, (Accepted/In press) In : American Naturalist.

Research output: Contribution to journalArticle

2 Scopus citations

Still Enigmatic: Innate Immunity in the Ctenophore Mnemiopsis leidyi

Traylor-Knowles, N., Vandepas, L. E. & Browne, W. E., Oct 1 2019, In : Integrative and comparative biology. 59, 4, p. 811-818 8 p.

Research output: Contribution to journalArticle

1 Scopus citations

Synthesis and characterization of ultrafiltration membranes by phase inversion and by uropathogenic Escherichia coli retention performance

Ounifi, I., Saidi, N., Kahloul, M., Sealey, K. S., Hafiane, A. & Ferjani, E., Sep 2019, In : Desalination and Water Treatment. 163, p. 109-117 9 p.

Research output: Contribution to journalArticle

The capacity to emit isoprene differentiates the photosynthetic temperature responses of tropical plant species

Taylor, T. C., Smith, M. N., Slot, M. & Feeley, K. J., Aug 2019, In : Plant Cell and Environment. 42, 8, p. 2448-2457 10 p.

Research output: Contribution to journalArticle

5 Scopus citations